Phragmites australis (common reed): 133913041
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Entry
133913041 CDS
T10575
Name
(RefSeq) protein argonaute 12-like
KO
K11593
eukaryotic translation initiation factor 2C
Organism
paua Phragmites australis (common reed)
Brite
Messenger RNA biogenesis [BR:
paua03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
133913041
Chromosome and associated proteins [BR:
paua03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
133913041
RNA interference (RNAi) pathway
RITS (RNA-induced transcriptional silencing) complex
133913041
microRNA pathway
RISC loading complex
133913041
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Piwi
ArgoN
PAZ
ArgoL1
ArgoMid
ArgoL2
Motif
Other DBs
NCBI-GeneID:
133913041
NCBI-ProteinID:
XP_062212056
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All DBs
Position
3:complement(39840984..39848243)
Genome browser
AA seq
1014 aa
AA seq
DB search
MSTRGGGGRGRGRGGGSRGRDRGGEEPGEHRDATCGRGARGDRGAGVARGGRGAGESGGH
FQAPQPAGGRGGYSGVAQGRGQVAAPTPAEVEALSRQVEKKMVVAAAQAGSHPQVDPSFP
APARAQAPAAAARVEGKGTVESLAAPAGRLPPASSKALVFPARPGYGTIGRRCRVRANHF
LVQVADKDIYHYDVAITPESNSRERNRWIVNELVKLHKQYLNGRLPVYDGRKGMFTAGPL
PFKEKQFLLKLTNPERANLREKEYKVTIKDAAKIDLYSLNQFLAGRQRELPQDTIQALDI
ALRECPSARYVTVSRSFFSKAFGHGGPIGSGVECWRGYYQSLRPTQMGLSLNIDISATAF
YKPQPIIEFAVEYLNLRDASKRLSDLDRIKLKKALKGVRVVVTHRRDIPMQYRITGITSA
PLNDLMFDQDGTRVSVVQYFKRQYNYSLKYTHWPCLQAGSDSRPAYIPMEVCNILEGQRY
SRKLNERQVTAILKLACERPAQRESSILEVASSNNYDNDYYAKEFGIKVMNQPALVDARV
LPAPRLKYHDSGKEKVCNPSIGQWNMINKRMVNGGSIKHWACLTFASRLRPNDIGMFCND
LVSMCNNIGMQMSTGPCVDIKQARQDNVEAAITSIHRHSAEVLAQQGLKEQQLELLIIIL
PDMSGFYGRIKRLCETELGVITQCCAPKNVLKGGKQYLENLALKINVKVGGRNTVLEDAL
NKRIPLLTDFPTIVFGADVTHPSPGEGSSPSIAAVVASMDWPQVTKYKCLVSSQGHRDEI
INNLFTEVRDPERGVVRGGMVRDLLVSFYKSTGHKPHRIIFYRDGVSEGQFSQVLLYEMD
AIRKACASLQEGYLPKVTFVVVQKRHHTRLFPENHRARDQTDRSGNILPGTVVDTKICHP
SEFDFYLCSHSGIQGTSRPAHYHILFDENGFSADALQTLTYNLCYTYARCTRSVSIVPPA
YYAHLGAFRARYYMEDDNSDQGSSAATSRTYDQSVPVRQLPRIKENVQQFMFYC
NT seq
3045 nt
NT seq
+upstream
nt +downstream
nt
atgtccacgcgcggcggaggcggtcgagggcggggccgtggcggtggttctcgagggcgg
gaccgaggcggcgaggagcccggggagcaccgcgatgccacgtgcggccgaggtgcccgt
ggtgaccgcggcgccggcgtggcgcgtggcggccgtggcgcaggcgagagtgggggacac
ttccaggccccccagccggcgggcgggcgaggtggatacagtggcgtggctcaggggcgc
gggcaggtggccgcgccgacgccggcggaggttgaggcgctgagtcgccaggtggagaag
aagatggtggtcgcagcggcacaggctgggtcgcacccgcaagtggacccgtcgttcccg
gctccggcgcgggctcaggcgcctgcagccgcggcgcgagtagagggaaaagggacggtg
gagtcgctggcggcgcctgcagggaggcttcctccggcgtcgagcaaggcgttggtgttc
cccgcgaggccggggtatgggacgatcgggcggaggtgccgcgtgcgcgccaaccatttc
ctcgtccaggtcgcggacaaggacatttaccactacgacgtggccatcactcctgaatcg
aattcacgggaaaggaacagatggatagttaacgagctcgttaaattgcacaaacaatat
ttgaacgggcgactgcctgtttacgatggaagaaagggtatgttcacagctggtccactg
ccattcaaagagaaacagtttcttcttaaactaacaaatcctgagagagcaaacctgagg
gagaaagagtacaaggttactatcaaggacgctgcaaaaatagatctgtacagccttaat
cagttcttggctggtaggcagagggaattgccacaggacaccatccaagctcttgatatc
gctctgagggaatgcccaagtgctaggtatgtaacggtctcaagatcatttttctcaaaa
gcatttggacatggtgggccgatcggaagtggtgtggaatgctggaggggttactaccaa
agcttacgccctacccagatgggactgtccctaaatattgatatttctgcgacagcattt
tacaagcctcagcccattatagaatttgcagtggagtatctgaacttgcgtgatgcatca
aagcgtttgtctgatctggatcgcataaaactgaagaaagcccttaagggagtccgggtt
gtggtcacacatcgccgtgatatacccatgcaatacaggattacagggattacctcagct
ccgttgaatgatttgatgtttgatcaagatggcacaagggtatcagttgtccagtacttt
aaacggcaatataattactctttgaaatacactcactggccatgtcttcaagctggcagt
gatagcaggccggcatatatacctatggaggtttgcaacatccttgagggacaacgctac
tctagaaagctaaatgagcgtcaagtcacagctatcctgaagttggcctgtgagcgacca
gcacaaagggagagcagtattttggaggttgctagtagtaacaactatgacaatgactac
tatgcaaaagaatttggcattaaggtgatgaaccaacccgccttggttgatgctcgtgtg
ctcccagctccaaggcttaaataccatgactctggaaaagaaaaagtatgcaacccttcc
attggccagtggaacatgattaacaagagaatggttaatggaggatctatcaaacactgg
gcatgtctaacttttgcctctcgcttgcgtccaaatgacattgggatgttttgcaatgat
cttgtcagcatgtgcaataacattggcatgcaaatgagtaccggaccatgtgtggatatt
aagcaagcccgccaagacaatgtagaagccgcaatcacaagtatacatcgtcattctgct
gaagtgcttgctcaacaaggtctgaaagagcaacaacttgagttacttatcataattttg
cccgatatgagtggtttttatggaaggataaaacgactttgtgaaactgagcttggtgta
ataactcaatgttgcgcacctaagaatgttctgaaaggaggaaaacagtatcttgaaaat
cttgctctgaaaatcaacgttaaggttggaggtcggaatactgtgcttgaagatgctttg
aacaagagaataccactactgacagattttcctacaatagtctttggagctgatgttacc
cacccgtctcctggggagggttcatctccatctattgcagcggtcgttgcatccatggat
tggccacaagttaccaagtacaaatgcttggtatcttcacaaggtcatagggacgaaatc
ataaataatcttttcacagaagtgagagatccagagagaggcgttgtaagaggtggaatg
gttagggatttgctcgtgtcattctacaagtctactggccacaagcctcacaggattata
ttctatcgagatggtgttagtgaggggcagttcagccaagtcttgctttatgaaatggac
gcaattcgcaaggcatgtgctagtttacaggagggctatctacctaaagtcacttttgtt
gttgtgcaaaagaggcatcacacccgcctgtttcctgaaaatcatcgtgcgcgtgatcag
acagataggagcggaaacatcctacctggaactgttgttgacacaaagatctgccatccc
agcgagtttgatttttacctctgtagtcattctggtatccagggaactagccgcccagca
cattatcacattcttttcgatgaaaatggtttcagtgctgatgcactgcaaaccttgact
tacaatctttgttacacctatgccaggtgcactcgctcagtctctatagttcctccagcg
tattatgcacacctgggtgcctttcgtgcgcgttactacatggaggacgacaactctgat
cagggctcatctgcggcaacatctcggacatatgatcaatctgtccccgtgaggcaactc
cccagaattaaggaaaacgtccagcagttcatgttttactgctga
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