Phragmites australis (common reed): 133913108
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Entry
133913108 CDS
T10575
Name
(RefSeq) uncharacterized protein LOC133913108
KO
K13114
pinin
Organism
paua Phragmites australis (common reed)
Pathway
paua03013
Nucleocytoplasmic transport
paua03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
133913108
03015 mRNA surveillance pathway
133913108
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paua03019
]
133913108
03041 Spliceosome [BR:
paua03041
]
133913108
Messenger RNA biogenesis [BR:
paua03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
133913108
Spliceosome [BR:
paua03041
]
Complex C
Other components
EJC/TREX
133913108
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pinin_SDK_memA
Atrophin-1
Motif
Other DBs
NCBI-GeneID:
133913108
NCBI-ProteinID:
XP_062212145
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All DBs
Position
3:complement(40984303..40989150)
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AA seq
407 aa
AA seq
DB search
MAAATEKTAEDIRRELQELQRQHREITERLRDPRGLRRGAAGPVPVGPRPLRGFARPASE
SGDQPEPKRRLLSAVVKVDGAEANEEGAKDAETEGREEGPGAAEGGDRRGITNGGFRRDG
SQRLLRRVDYNSLPEPAPRELPKNEDPNLVRRNKRMLGQLLVGTLEKFQQEDKKLSSSEA
YLRRSETQRKAEQKVREESERLRQQEREQIAEKRKRDMTLRARVAAKAEEKRLELLYIQW
TEHHKKLSNFLRTKAEPPIYYMPTKPIIDDPAIVEQNKEKVFEEWKSERRAELTQFQKQV
EEQYLSNVERQLERIQNARNARRGNGPANMQEMDKELDTHRAEHGLKTRRIPEEGGNDDD
EDAEDMAAEDELMDEVLDVNDAINDDPTKPPEEAATDGGEPAPEEAQ
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
atggccgccgcgacggagaagactgcggaagatatccgccgcgagctccaggagctccag
cgtcagcaccgcgagatcaccgagcgcctgcgcgacccccgcggccttcggcgcggcgcc
gctggccccgtccccgtcgggccccgcccgctccgcggcttcgcgagacccgcttcggaa
tcaggagaccagcctgagccgaagcggcggctgctatcggctgtcgttaaggtggatggc
gctgaagctaacgaggaaggcgcaaaggatgcagagacggaggggcgtgaggagggtcca
ggtgccgctgaaggcggtgacaggaggggtatcaccaatggcgggttcaggagggatggg
agccagcggttgctgaggagggtggactataattcgctgcctgagcctgccccaagggag
cttcccaaaaatgaggacccgaacttggtgaggaggaataagaggatgctggggcagctt
cttgtcggtacattagagaaatttcagcaagaggacaaaaaactttccagctccgaggct
tatctgcgcagatcggagactcagcgaaaggctgagcaaaaggttcgtgaggaaagcgaa
aggttgcgacagcaagagcgagagcaaattgcagagaagcgtaagcgtgacatgacgctt
cgcgctcgtgtagctgctaaggcagaagaaaagaggttggagctgttgtacattcagtgg
actgagcatcataaaaagctgtccaatttcctaaggacaaaagctgaaccgcctatttac
tacatgccaactaaaccaattattgatgatccggctattgtcgagcagaacaaggaaaag
gtatttgaagaatggaaatctgagcgcagggctgagctgactcaatttcagaagcaagtt
gaggagcaatatctctccaatgttgagaggcagctggaaaggatccagaatgcccggaac
gcacgaagggggaacgggcctgcaaacatgcaagaaatggataaggagctggacacgcac
agggcagagcatggtctgaagactcggcggattcctgaggagggtggcaatgatgatgat
gaggatgcggaggacatggccgcagaagacgagctgatggatgaagtcttggatgtcaac
gatgcgatcaatgatgacccaaccaagccacctgaggaagctgctactgatggtggcgag
cctgcacctgaggaggcacaatag
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