Phragmites australis (common reed): 133913180
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Entry
133913180 CDS
T10575
Name
(RefSeq) phytochrome a
KO
K12120
phytochrome A
Organism
paua Phragmites australis (common reed)
Pathway
paua04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
133913180
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GFIT
Motif
Pfam:
PHY
PAS
PAS_2
GAF
PAS_9
PAS_4
HATPase_c
HisKA
PAS_8
PAS_10
Motif
Other DBs
NCBI-GeneID:
133913180
NCBI-ProteinID:
XP_062212228
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Position
3:complement(42549460..42556467)
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AA seq
1130 aa
AA seq
DB search
MSSSRPTQGSSSSSRTRQSSRARILAQTTLDAELNAEYEESGDSFDYSKLVEAQRTTPPE
QQGRSEKVIAYLQHIQRGKLIQPFGCLLALDEKSFKVIAFSENAPEMLTTISHAVPNVDE
PPKLGIGSNMRSLFTDPGATALQKALGFADVSLLNPILVQCKTSGKPFYAILHRATGCLV
VDFEPVKPTEFPATAAGALQSYKLAAKAISKIQSLPGGSMEVLCNTVVKEVFDLTGYDRV
MAYKFHEDEHGEVFAEITKPGIEPYLGLHYPATDIPQAARFLFMKNKVRMICDCRARSVK
IIEDEGLSIDISLCGSTLRAPHSCHLQYMENMNSIASLVMAVVVNENEEDDEAEPGQPSQ
QLKKKKLWGLIVCHHESPRYVPFPLRYACEFLAQVFAVHVNKEFELEKQIQEKSILRMQT
MLSDMLFKEASPLSIISGSPNIMDLVKCDGAALLYGDKVWRLRTAPTESQIRDIAFWLSE
VHRDSTGLSTDSLHDAGYPGAASLGDMICGMAVAKITSKDILFWFRSHTAAEIKWGGAKH
DPSDKDDNRRMHPRLSFKAFLEVVKMKSLPWNDCEMDAIHSLQLILRGTLNDAIKPARAS
GLDNQIGDLKLDGLAELQAVTSEMVRLMETATVPILAVDGNGLVNGWNQKVAELTGLRVD
EAIGRHVLTLVEESSVPIVQRMLYLALQGREEKEVQFEVKTHGSKRDEGPVILVVNACAS
RDLHDHVVGVCFVAQDMTVHKLVMDKFTRVEGDYKAIVHNPNPLIPPIFGADQFGWCSEW
NAAMTKLTGWHRDEVLDKMLLGEVFDTSNASCLLKNKDAFVRLCIIINSALAGEEAEKAP
FGFCDRNGKYIECLLSVNRKINADGIVTGVFCFIHVPSDELQHALHVQQASEQTSLKKLK
AFSYMRQAIKKPLSGMLYSREVLKSTSLNEEQMSQVRVADSCHRQLNKILADSDQDSITD
KSSCMDLEMVEFLLQDVVVAAVSQVLIDCQGKGIRISCNLPEKFMKQKVYGDGIRLQQIL
SDFLFVSVKFSPVGGSVEIASKLTKNSIGENLHLIDLELRIKHRGTGVPAEILSQMYEDN
KEQSEEGLSLLASRNLLRLMNGDVSHLREAGMSTFILTVELASAPTAIGQ
NT seq
3393 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcctcaaggcctactcagggttccagttcatccagcaggactcgccagagctca
cgggcaaggatattagcgcaaacaacccttgatgctgaactcaatgcagaatatgaagaa
tctggtgattcgtttgattactccaagttggttgaagcacagcggaccactccacctgag
cagcaagggcgttcagagaaggtcatagcttacttgcagcacattcagagaggaaagcta
atccaaccatttggttgcttgttggcccttgatgagaagagcttcaaggtcattgcattc
agtgagaatgcaccggaaatgcttacgacgatcagccatgcagtgcctaatgttgatgaa
cccccaaagctaggaattggcagtaacatgcgctcccttttcactgaccctggtgccaca
gcactgcagaaggcactaggatttgcagatgtttctttgctgaatcctatccttgttcaa
tgcaagacctcaggcaagccattctatgccattcttcatagggcaactggttgcctagtg
gtagattttgagcctgtgaagcctacagaatttccggccactgctgctggggctttgcag
tcgtacaagcttgccgccaaggcgatctccaagatccagtcactgccaggtggaagcatg
gaggtcttatgcaataccgtggttaaggaagtcttcgaccttacaggttacgacagggta
atggcttacaagttccatgaagatgagcatggggaggtatttgctgagatcaccaaacct
ggtattgagccttatcttggcctgcactatccggccactgatatccctcaagctgccagg
tttcttttcatgaagaacaaagtccgaatgatctgtgattgtcgtgcaagatccgtgaag
attattgaagatgagggactctccattgatattagcttgtgtggttcaactcttagagcg
ccacacagttgtcaccttcagtatatggagaacatgaactcgattgcatcccttgtcatg
gctgttgtggttaatgaaaatgaagaggatgatgaagccgagccaggacaaccatcacaa
cagctgaagaagaagaaactgtggggtctcattgtttgccaccatgagagccccagatat
gttccctttccactgcggtatgcctgtgaattcttggctcaagtgtttgctgtccatgta
aataaggagtttgagttggagaagcagatacaagagaagagcatactgcgtatgcaaaca
atgctctctgacatgctattcaaggaagcctctcccttgagtatcatatccgggagtcca
aatatcatggaccttgttaaatgtgatggtgctgctcttttgtacggggacaaagtatgg
cggctacgtacggctccaactgagtcccagatacgtgatattgccttctggctttcagaa
gttcatagggattccactggcttgagtactgatagcctccatgatgctggatatccagga
gctgcttcccttggtgacatgatttgtggaatggcagtggctaagatcacttccaaggat
attcttttctggttcaggtcacatacagctgctgaaattaagtggggaggtgcaaagcat
gatccatctgataaggatgacaacagaaggatgcaccctaggttgtccttcaaggcattc
ctagaggttgtcaagatgaagagtttaccctggaatgactgtgaaatggatgctattcac
tcattgcaacttatacttagaggtacactgaatgatgccatcaagccagccagggcatcc
ggtttggataaccagattggtgatctcaagctcgatgggcttgctgaattacaggcagtg
acaagtgaaatggttcgcctgatggaaacagcaactgttccaatcttagcagtagatggc
aatggattggtcaatggatggaatcaaaaggtagcggagttgacagggttgagggttgat
gaggctataggaaggcacgtacttacgcttgtggaggaatcttctgtaccgattgtccag
aggatgctatacttagctctgcagggcagagaagagaaggaagttcaatttgaggtgaaa
actcatggctccaagagggatgagggccctgttatcttggttgtaaatgcttgtgccagt
cgtgaccttcatgaccatgttgttggggtgtgctttgtagcccaagatatgactgttcat
aagttggtcatggacaaatttactcgggttgagggagattataaggcaatcgttcacaac
ccaaatccactcattcctcctatatttggtgctgaccaatttgggtggtgctctgagtgg
aatgcagccatgaccaagcttactgggtggcacagagatgaggtgctagataagatgctc
cttggtgaagtttttgacactagcaatgcttcctgccttctgaagaataaagatgcattt
gtacgtctttgcattattatcaacagtgcattagcaggggaagaagcagaaaaggctcca
tttggcttctgcgaccgaaatggaaagtacattgagtgtcttctgtcagtgaacagaaaa
atcaatgcagatggtattgtcactggagtattctgtttcattcatgttcctagtgatgag
ctgcagcatgcactacatgtgcagcaagcctcagaacagacatcactgaaaaagttgaag
gcattctcctacatgcgacaagccatcaagaaacctctctcaggtatgctttactctagg
gaagtgctcaagagcacaagtttgaatgaagagcagatgagtcaggttcgtgtcgcagat
agttgtcatcgccagctaaacaagatacttgccgactcagatcaagatagcataactgac
aagtcaagttgcatggatttggagatggttgaatttctgttgcaagatgtggtggtggct
gctgtaagtcaagtactgatagattgccagggaaaagggatcagaatctcttgcaacctg
ccagagaaatttatgaagcaaaaagtttacggggatggtattcgactccagcagatcctc
tccgacttcctattcgtttcggtgaagttctctcctgttggaggttctgttgagatagca
tccaaactgactaagaacagcattggggaaaatctccatctcatagacctggaacttagg
atcaaacaccggggaacaggagtcccagcagaaatattgtcacaaatgtatgaggacaat
aaagagcagtcagaggagggcttgagccttcttgcttctaggaaccttttgaggctcatg
aatggcgatgtctctcatctaagggaggctggcatgtcaaccttcatcctcaccgttgaa
cttgcttctgctccaacagccattggacaataa
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