Phragmites australis (common reed): 133913249
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Entry
133913249 CDS
T10575
Name
(RefSeq) WD repeat-containing protein PCN-like
KO
K14548
U3 small nucleolar RNA-associated protein 4
Organism
paua Phragmites australis (common reed)
Pathway
paua03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
133913249
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
paua03009
]
133913249
Ribosome biogenesis [BR:
paua03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
133913249
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_Prp19
WD40
WDR55
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
Beta-prop_HPS5
Beta-prop_TEP1_2nd
Beta-prop_EML
Beta-prop_RIG_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_IFT140_1st
Beta-prop_SPT8
WD40_MABP1-WDR62_2nd
EIF3I
Nucleoporin_N
WDR90_beta-prop_4th
Pep3_Vps18
Beta-prop_SCAP
Hira
Beta-prop_IFT122_1st
Motif
Other DBs
NCBI-GeneID:
133913249
NCBI-ProteinID:
XP_062212331
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Position
3:43761392..43766238
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AA seq
816 aa
AA seq
DB search
MEKLRVHRCGGGAVAWSPSPVVALATSPCASQVAAAREDGSLELWLVSPGSVGWHHQLTI
QGNAESRITSLVWGRRGGDGESGRLLSSSVDGSVAEWDLFHLQQKTVLDTVGVPLWQMAM
EPSDDSLKSEINGSGFAINGHANHNDCSDSDVSNVDDGDNSDDEDGSAKTSSSCNANEFQ
RLALACDDGSVRLYNVPESGALTYYRSLPRGSGRVLSVTWSNNARLIFSGSSDGLIRCWD
LTSFHEKYRITAGLGGAGMGPELCIWSLLFLRCETLVSGDSTGSVQFWDSHHGTLLQAHS
NHKGDVNALATVPSQNRVFSAGSDGQVILYKVSKDEFGAHKDMAKEQVRKWVYVGYVRSH
THDVRALTMAVPICSEDGLPEEKAVKIRRREKPEFSYHKWAHLGIPMLISGGDDTKLFAY
SAREFTQFAPHNFCPAPQRPLINLARDSTVNGDSVMLVQSANWLDVLLVTVQNQLTPSTS
SRGDATIRHLARLKSKGSQKIISNAASTNGTLLAYSDSTKPCLFALKHKGGKKYSLEKLE
LPKRLPCSQSMLFTVDSSNLILAGRDGKIYIIDIASRHISNVFHPTRKMAGTKFSSRESP
VTKMFLSADGQWLAAVNCFGDIYVFNLEVERQHWFIPRMNDGSVTSGGFCPKNNALVITT
SKNEVYVFDVEAKQLGEWSKRYTHHLPRSFQEFPGEVIGLSFPPQSSSLVVVYSTRAMCF
IDFGLPVIEDVQLLNGSDRPAEKLDSQKSTKTKQKRRAREEDFRQEKRNNFDFFAFKDPA
LFVGHLLDSSILIVEKRWMDVVEGFGAPVHRHIYGT
NT seq
2451 nt
NT seq
+upstream
nt +downstream
nt
atggagaagctccgcgtccaccgctgcggcggcggcgcggtcgcgtggtcgccctccccc
gtcgtcgctctcgccacctccccctgcgcctcgcaggtcgccgccgcgcgcgaggacggc
tcactcgagctctggcttgtctccccgggctccgtcggctggcaccaccagctcacgata
caggggaacgccgagtccaggatcacgtcgctggtgtgggggcggagaggcggagatggc
gagagcgggcggctgctctcgtccagcgtcgacgggtcggtggccgagtgggatctcttt
cacctgcagcaaaagactgtcctagatactgttggagtacctctctggcagatggctatg
gaaccttcagatgattccttaaagtctgagattaacggctcaggatttgccatcaatggc
catgcaaatcataatgactgcagcgactctgacgtaagtaatgttgatgatggtgacaac
tccgacgatgaagatggttctgccaagacaagctcttcgtgcaatgcaaatgaattccag
cgactggcccttgcctgtgatgatggttcggtacgcttgtataatgtacctgaatcaggc
gcattgacttactacagatctctcccgagaggaagtgggcgggttttgagtgtgacatgg
agtaataacgccagacttatattttctggaagcagtgatggtttaattagatgctgggat
ttgacatctttccatgaaaagtatcgtatcacggctggactaggaggagctggtatggga
cctgaactttgtatctggtcattattgtttctgaggtgtgaaacccttgttagcggagat
agtactggtagtgtacagttttgggatagccaccatggaactcttttacaagctcactct
aatcataaaggcgatgtgaatgcactagcaactgtgcctagtcagaacagggtgttctct
gcagggtctgatgggcaggtaattttgtacaaagtatcaaaagatgagtttggtgctcat
aaagatatggccaaagaacaagtgcgcaaatgggtctatgtgggatatgtaagatctcac
actcatgatgtaagggcattgaccatggctgtaccaatttgtagcgaagatggtttacca
gaggaaaaggcggtgaagattcgccgtcgtgaaaaacctgaattcagttaccataaatgg
gcccatcttggtattccgatgctaatatctggtggtgatgacactaagctctttgcttat
tcagcaagggagtttactcaatttgcacctcataacttctgccctgcacctcaacgccct
ttgataaatctggcaagagatagtacagtcaatggagattctgtaatgcttgtccaatct
gccaactggttggatgttttacttgtgaccgttcagaaccagttaactccaagtacatca
tctagaggcgatgctacaatacgacaccttgctcgtttgaaaagcaaggggtcccaaaaa
atcatttctaatgctgcctcgaccaatggaacacttttggcctattcggattctacgaag
ccctgccttttcgcactaaagcataagggtggaaagaagtacagccttgaaaaattagag
ctgccaaaacgtttgccttgttctcagagtatgctgtttactgttgactcgtcaaatttg
atactagctggtcgtgatggaaaaatatatatcatagatattgcatcaagacatatttca
aatgtgtttcaccctacaagaaagatggccggaacaaaattttcttctagagaatcacct
gtgacaaaaatgttcctaagtgcagacgggcaatggttggctgcagttaactgctttggg
gatatttatgtattcaatcttgaggtagaaaggcaacactggttcatacctagaatgaat
gatggttctgttacatctggtggcttttgtcccaagaacaatgcccttgtgataactaca
tctaaaaatgaggtgtatgtatttgatgtagaagcaaaacaattaggtgaatggtccaag
cgctatacacatcacttacccagaagtttccaggaatttcctggagaggtgattggcctc
tcatttcctccgcagagctcgtcattggttgtggtctatagtacaagggcaatgtgcttc
attgattttggattgcctgttattgaggatgttcaattgttgaatggatcagacagacca
gcagaaaagctagactcacaaaagagtacaaaaacaaagcaaaaacgtagggcccgcgag
gaagattttagacaagagaagaggaacaactttgacttctttgcgttcaaagatccagcc
ctgtttgttgggcacctattggacagttcaattctgatagtagagaagcgatggatggat
gtggttgaaggttttggagcgccagttcacagacatatatacgggacatga
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