Phragmites australis (common reed): 133913546
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Entry
133913546 CDS
T10575
Name
(RefSeq) splicing factor Cactin-like
KO
K25058
cactin
Organism
paua Phragmites australis (common reed)
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
paua03041
]
133913546
Spliceosome [BR:
paua03041
]
Complex C
Other components
Complex C specific factors
133913546
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Gene cluster
GFIT
Motif
Pfam:
CactinC_cactus
Cactin_mid
SR-25
Motif
Other DBs
NCBI-GeneID:
133913546
NCBI-ProteinID:
XP_062212706
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All DBs
Position
3:47487871..47494457
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AA seq
668 aa
AA seq
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MPKRERDSKGRRRSSSSSRRQRSPSPSDSDAASESSGSPRRSRHRRRSRRRRDTPSSSSD
ASGSGSGDSGSDSEGRRRKGRSGSRRRRDVTEEQIVEYMAKKAQKKAEKVAKKLKTNAVS
GYSNDSNPFGDPNLTENFVWRKKIERDVSQGQKVDISVKAEKKKQLERMAEIEKVKKRRE
ERAIEKAQHEEEMALLARERARAEFQDWEKKEEEFHFDQSKVRSEIRLREGRTKPIDVLL
KNLNFSDEFDVELNEPYLVFKGLTVKEMEELRDDIKMHLDLDRESQTNVKYWEALMVVCD
WELGEARKRDALDRARVRGEEPPSEVLAEERGLHASIEGDVKSLLDGKTSTELEDMQSQI
ESQMRSGTAKVVEYWEAILKRLHIYKAKACLREIHASILRKHLHRLEHPGAAEQDVESEK
EVDNKVENNMHSDEDDKQYSPEPIPEQTDNHLEEEDGSFSPQLMHGNEDEDAIDPEEDKA
ELDRKREAVVMEHQRKAQEAIKAKARVPDEMETKAVKTMGAMEEGDAVFGAGAEVNLDSQ
VYWWHDKYRPRKPKYFNRVHTGYEWNKYNQTHYDHDNPPPKIVQGYKFNIFYPDLVDKSK
APTYSIEKDGSSGETCHIRFHAGPPYEDIAFRIVNKEWEYSHKKGFKCTFERGILHLYFN
FKRHRYRR
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atgccgaagcgcgagcgcgacagcaagggccggcgccgctcctcgtcgtcgtcgcggcgg
cagcgcagtccgtccccgtccgactcggacgccgcctccgaatccagcggctcgccccgc
cggagccgccaccgccgcaggagccgccgccggagggacaccccgtcctcgtccagcgac
gctagcgggagcgggagcggagattccgggtcggactctgaagggcgccgacgcaaggga
aggagcggaagccggaggcgccgggacgtcaccgaggagcagatcgtggagtacatggcg
aagaaggcgcagaagaaggccgagaaggtggcgaagaagctgaagacgaatgcggtttcg
gggtactccaacgattcgaacccctttggcgatcccaacctgacagagaattttgtgtgg
cgaaagaagatagagcgtgatgtatctcaaggacaaaaggtggacatttctgtcaaagct
gaaaagaagaaacagctagaaagaatggctgaaatagagaaggttaagaaaagaagggaa
gaaagagcaattgaaaaggcgcagcatgaagaggaaatggcgttgctagctagagaaaga
gcacgtgccgagtttcaagactgggagaagaaagaggaagagtttcattttgatcaaagc
aaagtcaggtctgaaatcaggttgcgggaggggcgtacaaaacctattgatgttcttctg
aagaatcttaatttctcagatgaattcgatgttgagttaaatgagccctatctggtgttc
aagggattaacagtgaaagaaatggaagagctacgtgatgacattaagatgcatcttgat
ctggacagggaaagccaaactaatgtgaagtactgggaggcactcatggtggtatgcgac
tgggagctaggtgaggctcggaaaagagatgccttagatcgggctagggtgcgtggtgag
gaaccaccttctgaggttcttgcagaagagagaggtttgcatgcaagtattgaaggggat
gtaaaaagtctcctggatggtaagacttccacagagctagaagatatgcaaagtcaaatt
gagtcccaaatgcgctctggaacagcgaaagttgttgaatactgggaggccattctgaaa
cggcttcatatttacaaagcaaaggcttgcctgagggaaatccatgcttctatcctaagg
aagcatctacatcgtttggagcatcctggcgctgctgaacaggatgtggaatccgagaaa
gaagttgacaataaagtggagaataatatgcactctgatgaagatgataaacaatattcg
cctgaaccgatccctgagcaaacagataatcatttggaagaagaagatggatccttttct
ccacagctaatgcatggcaatgaagatgaagatgcaattgatcctgaagaggacaaggct
gagctggaccgaaaacgtgaagctgtagttatggagcatcaaaggaaagctcaggaagcc
attaaagcaaaggcaagagtacctgatgagatggagacgaaagccgtaaaaacgatggga
gctatggaggaaggtgatgcagtttttggtgcgggtgctgaagtgaacctcgattcacag
gtgtactggtggcatgacaagtatcgaccaagaaagcccaagtacttcaatcgggtgcat
actggatatgaatggaacaaatacaaccagactcattatgatcatgacaatccaccacct
aaaattgtccaaggctacaagttcaatatattttaccctgatcttgtggataaatcaaag
gcaccaacatacagtatagagaaagacggaagtagtggtgagacttgccatatcagattt
cacgccggccctccatatgaggacattgctttccgtattgtcaacaaggagtgggaatac
tcacacaagaaggggttcaagtgtacatttgagcgtgggattctccatctctattttaac
ttcaagcgtcaccgctacaggcgttga
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