Phragmites australis (common reed): 133913576
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Entry
133913576 CDS
T10575
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 37
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
paua Phragmites australis (common reed)
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paua03019
]
133913576
03041 Spliceosome [BR:
paua03041
]
133913576
03036 Chromosome and associated proteins [BR:
paua03036
]
133913576
Enzymes [BR:
paua01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
133913576
Messenger RNA biogenesis [BR:
paua03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
133913576
mRNA cycle factors
Common to processing body (P body) and stress granule
133913576
Spliceosome [BR:
paua03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
133913576
Chromosome and associated proteins [BR:
paua03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
133913576
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
133913576
NCBI-ProteinID:
XP_062212740
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All DBs
Position
3:complement(47797370..47802454)
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AA seq
631 aa
AA seq
DB search
MRSSWADSVANAEESAPATVTAAAPVAAHQNSRPTLSSYVPPHLRGRSAGPPSENQAPSS
VPAPAPGPADVRSAAVHPSGYAAAVGGGSRWAGPIGGGGGSAVGGPRKGGGGGRGGDGGW
NTRPGWDRRDREPNPFADSEAADVDFESQESTGINFDAYEDIPVETSGHDVPPPVNTFAE
IDLGDALNENIRRCKYVKPTPVQRHAIPIAIAGRDLMACAQTGSGKTAAFCFPIISGILN
SRPPQRPRGSRTAYPVALILSPTRELSVQIHEEAKKFSYQTGVKVVVAYGGAPIHQQLRE
LERGVEILVATPGRLMDLLERARVSLQMIKYLALDEADRMLDMGFEPQIRKIVEQMDMPP
RGVRQTMLFSATFPKEIQRLASDFLADYIFLAVGRVGSSTDLIAQRVEFVLEADKRSYLM
DLLHAQKASGSHGKQSLTLVFVETKRGADALEDWLYKNGFPATSIHGDRTQQEREYALRS
FKSGATPILVATDVAARGLDIPHVAHVINFDLPNDIDDYVHRIGRTGRAGKSGLATAFFN
EGNISLARPLCELMQEANQEVPQWLERYGARSSYGGGGGRNRRSGGARFGGRDFRRDRDF
RGGGGGGGGYGGGGYGGGGYGGGQGATSSWD
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
atgcgatcctcatgggctgattcagttgcgaacgccgaggaatcggcgcccgcgactgtt
actgctgctgcccccgttgctgctcaccagaactcgcgccctaccctcagctcgtacgtt
cctcctcacctccgtggccgctcagctggtcctccatctgagaaccaggccccatcttcg
gtgcctgctccagctccaggaccagctgacgtacgatcagctgctgtgcatccttctggg
tacgcagctgctgttggaggtggctctcgttgggctggccctattggtggtggtggtggc
agtgctgtaggtggtccgcgcaagggtggtggcggtggccgcggtggggatggcggttgg
aacacccgccctggctgggaccgcagagaccgtgaaccaaacccttttgctgatagcgag
gctgcagatgttgattttgagagtcaggagagcacaggcatcaactttgatgcatatgag
gatatccctgtggagacaagtggccatgatgtccctccacctgtcaacacatttgcagag
attgatttgggtgatgcactgaatgagaacatacggaggtgtaagtacgtgaaaccaaca
ccagtgcaacgacatgccattccaatcgccattgcggggcgggatctcatggcctgtgct
cagacagggtctgggaagaccgcagccttttgtttcccgatcatcagtggtatcttgaac
tcaaggccaccgcagaggccaagaggttcaaggactgcatatcctgttgcactgatatta
tcccctactcgtgagctttctgtgcaaattcatgaagaagcaaagaagttctcataccag
actggtgttaaggtggttgttgcatatggtggagcaccaatacatcaacagttgagggaa
ttggaaagaggtgttgaaatccttgtggcaactcctggtcgtttgatggatctgctagag
agggctagagtatcactacaaatgataaagtacttagctcttgatgaagctgatcgaatg
ctcgatatggggttcgaaccacagatacgtaaaattgttgagcagatggacatgccacct
cgtggtgtgaggcagacaatgttgtttagtgctacttttccaaaagagattcagcgacta
gcttcagattttcttgcagactacattttccttgctgttggaagagttggttcaagtact
gatttgattgcccagagggtagagtttgtccttgaagcagacaaaagaagttacctcatg
gaccttcttcatgcacaaaaagctagtggttctcatgggaagcaatctctcacattggtt
tttgtggagacaaagaggggagctgatgctctggaggattggctgtataaaaatgggttc
cctgcgacaagtattcatggtgaccggacacaacaggaaagagagtatgcactgaggtca
tttaagagcggagcaactcccatactcgttgcaactgatgtggctgcccgtggacttgac
ataccacatgtcgcccatgtcatcaattttgacctcccaaatgatatagatgactatgtt
catcgtattgggaggacaggccgagcggggaaatctggtttggcaactgcctttttcaac
gagggcaacatatcactggcaaggccactgtgtgaactaatgcaggaagctaaccaggag
gtccctcaatggcttgagcgctatggtgcccgttcttcgtatggaggtgggggtggtaga
aaccgccgatcaggtggtgctcgatttggtggccgcgacttccgccgagaccgagacttc
aggggaggaggtggtggtggtggtgggtatggtggtggaggttacggaggtggtggatac
ggtggtggccaaggcgcaactagttcctgggactaa
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