Phragmites australis (common reed): 133913821
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Entry
133913821 CDS
T10575
Name
(RefSeq) ATP-dependent DNA helicase 2 subunit KU80
KO
K10885
ATP-dependent DNA helicase 2 subunit 2
Organism
paua Phragmites australis (common reed)
Pathway
paua03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
133913821
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
paua03400
]
133913821
DNA repair and recombination proteins [BR:
paua03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA-PK complex
133913821
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ku
Ku_PK_bind
Ku_C
Ku_N
VWA
Motif
Other DBs
NCBI-GeneID:
133913821
NCBI-ProteinID:
XP_062213072
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All DBs
Position
3:50106666..50113371
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AA seq
686 aa
AA seq
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MARNKEAMVLLLDVGPSMHGVLQEVKNICSTLVHKKLVHNRSDEVGIVLFGTKETCNELA
KELGGYKHVMVAHDIKVVDEGTARALQNLPLGTVPGDFLDAVVVGLDMLIRKFGNTKGKQ
RLCLITSAQHPLRDPPEGTKEDQVDTIADQMKRHDIKMNCIVFREQGVHNAVMEENDRLL
YQFRDKSVAKVVQVDSPTSLLGALKTRNVLPVTVFRGDLEVSSNFKIKVWVYKKTSEEKF
PTLKKYSDKAPPSDKFASHEVKVDYEYKSVIEPDKVVPPDQRIKGYLYGPQVVPISSAEW
EAVKFKPEKGVKLLGFTDRSSILRHHFMKDVCSFISEPGNTKVTLAVSAIARAMQQMNKV
AIVRCVWRQGQGNVAFGVLTPNISSVNNVPDSFYFNVLPFAEDIREFQFRSFSSLPSSSQ
PTEEQQEAADNLVKMLDLAPAGREVLKPNFTPNPVLERFYSYLDLKAKQPDANVPPLDRC
LKRITEPDPVVIDHQTPLIQNLGKSFELKENPKKKKARTQDKLAYTGGNDQAKSTEEPSV
EKDGILGVLYPQTEDVGEIGDLNPVQDFEAMLAKRSNSTWVQKAIEEMQKYTTALLENSR
DGDNYQKALECFVALRKACIIEQEPQEFNQFLKNIYERLKTGDVANFFHLLSSKNISLIS
EEEAADSNVTEEMARRFYLKQEAASQ
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atggctcgcaataaggaagcaatggttttgctattggatgttgggccctcaatgcatggg
gtgctgcaggaggtcaagaacatatgctcaactcttgtgcataagaagctagttcataac
aggagcgatgaggttggtattgtactctttgggactaaagaaacgtgcaatgagcttgcg
aaggaacttgggggctataagcatgtgatggttgcacacgatattaaagttgtagatgaa
gggacagcacgtgctctgcaaaaccttccattgggaactgtccctggtgactttctggat
gctgttgttgttggtttggatatgctgattaggaaatttgggaataccaaagggaagcaa
cgtctctgtctaatcaccagtgcacagcatccgttaagagatccacccgaggggactaaa
gaagatcaggtggacaccattgcagaccagatgaaaagacatgatattaagatgaactgt
attgtcttcagagaacaaggagtccataatgctgtaatggaagaaaatgaccgactactg
tatcagttcagagataaatcagtagcaaaggtggtccaggttgacagcccaacatcactc
ttaggtgctctcaagacaagaaatgtgcttccagttactgtcttcaggggagatctggaa
gtgagctccaattttaaaatcaaggtatgggtctataagaaaacatctgaggagaaattc
cccactttgaagaagtattctgacaaggctcctccaagtgataaatttgcctctcatgaa
gtcaaagtggactatgagtacaaaagtgtcatcgaaccagacaaagttgttccaccagat
cagagaattaaagggtatctttatggtcctcaggttgtccctatatcatctgccgaatgg
gaggctgtcaagttcaagccagagaaaggtgtgaagcttctaggctttacagatagatcc
agcatattgcggcaccattttatgaaagatgtatgttcctttatatctgaaccaggaaac
acgaaagtaactcttgcagtttctgccatagcaagagcaatgcaacaaatgaacaaggtt
gctattgtgcgatgcgtgtggaggcaaggtcaagggaatgttgcttttggtgtactgacg
ccaaacatttcatcagtgaataatgttccagattctttttacttcaatgtactcccgttt
gctgaggacatcagagagtttcagttccgatcctttagcagcctgccgtcatcatctcag
cccactgaagaacaacaagaagctgcagataatctagtgaagatgttagacctagcacca
gctggaagggaggtcctcaagcctaatttcacaccgaatcccgtgttggagagattctac
agttaccttgatctaaaggcaaagcagccagatgcaaatgtcccgccacttgatagatgt
ctaaagaggataacagaacctgatcctgttgtcattgatcatcaaacaccattaatccaa
aatttaggcaaatcttttgagctgaaggagaaccccaagaaaaagaaagcacgaacgcag
gacaaactggcatatactggtggaaatgatcaagctaaatcaacagaagagccttctgta
gagaaggatgggattcttggagttttatatcctcaaacagaggatgtcggggagatcgga
gatttaaatcctgttcaagattttgaagccatgctggcaaagagatctaactcaacgtgg
gttcagaaggcaattgaagagatgcagaaatacacaacagctttgttagaaaactctcgg
gatggggataattaccaaaaggcacttgaatgttttgttgctctgcgtaaggcctgcatt
attgagcaggaaccacaggaattcaaccagttcctaaagaatatttacgagagattgaag
acaggtgatgttgcgaacttctttcacctgctttcgtcgaaaaatatttcacttatcagt
gaagaggaagcagctgacagtaacgtgacggaggagatggcaagaagattctatctgaaa
caagaagcggcgtctcagtag
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