Phragmites australis (common reed): 133914896
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Entry
133914896 CDS
T10575
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
paua Phragmites australis (common reed)
Pathway
paua03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133914896
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
paua03041
]
133914896
03009 Ribosome biogenesis [BR:
paua03009
]
133914896
Enzymes [BR:
paua01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
133914896
Spliceosome [BR:
paua03041
]
Complex A
U1 snRNP components
U1 related factors
133914896
Complex B
133914896
Ribosome biogenesis [BR:
paua03009
]
Eukaryotic type
Pre-60S particles
Helicases
133914896
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
133914896
NCBI-ProteinID:
XP_062213871
LinkDB
All DBs
Position
1:complement(2494156..2498425)
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AA seq
493 aa
AA seq
DB search
MSRFDGRAADPGSYRDRHREGAFGGGTRAFAPPSKADASTAAELDGLPRFEKNFYVESPA
VAGMTEDEVEAYRRRREITIEGRDVPKPVREFRDVGFPEYVLQEITKAGFVEPTPIQSQG
WPMALRGRDLIGIAETGSGKTIAYLLPAIVHVNAQPILAPGDGPIVLVLAPTRELAVQIQ
QEATKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMIESHHTNLRRVTY
LVLDEADRMLDMGFEPQIKKIVSQIRPDRQTLYWSATWPKEVEQLARNFLFDPYKVIIGS
EELKANHSIVQHVEILSESQKYNKLVNLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGW
PALSIHGDKSQAERDWVLSEFKSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYV
HRIGRTGRAGAKGTAYTFFTAANARYAKELINILEEAGQKVSSELAAMGRGAPPPSSGYR
DRYKGFGGGRSWS
NT seq
1482 nt
NT seq
+upstream
nt +downstream
nt
atgagccgcttcgacggccgcgccgcggacccaggctcctaccgcgaccgccacagagag
ggggcgtttggaggcgggacgagggcgttcgcgccgccgagcaaagccgatgcttctacg
gcggcggagctggatgggctgccgcggttcgagaagaacttctacgtggagtcgcccgct
gtggccggcatgacggaggacgaggtggaagcgtaccgccgccgccgggagatcaccatc
gagggccgcgacgtgcccaagccggtgcgcgagttccgcgacgtcggcttcccagaatat
gtgttgcaagaaatcacaaaagctggctttgtagaacctactcctattcaatcacaaggt
tggccaatggcactgaggggtcgtgaccttattggcattgcagagacaggatcagggaaa
actattgcttatcttttacctgccattgttcatgtgaatgctcagcctattcttgctcct
ggcgatggtccaattgttctggtgttagcccctacacgtgaacttgctgttcagatacag
caagaggcaaccaagtttggtgcatcatcaaagataaaaagtacatgcatatatggtggt
gttcccaaaggtccacaagttcgtgatcttcaaaaaggtgttgaaattgttatagccaca
ccaggacgactaattgatatgatagaatcacatcatacaaacttgcgaagggtcacatat
cttgttttagatgaagcagatcggatgcttgacatgggctttgaacctcagattaagaaa
attgtttctcagattcgtccagaccgccaaacactttactggagtgctacctggccaaag
gaagttgagcagcttgcaaggaattttctttttgacccatacaaggtgattattggttct
gaagagttgaaagcaaatcattccattgttcagcatgtggaaatattatctgagagtcag
aagtataacaagttggtcaatctgctggaagatataatggatggcagtcgaattttaata
tttatggacaccaagaagggatgtgatcagatcactagacagcttcgaatggatggttgg
cctgctttgtctatccatggtgacaagagccaagcagaacgggattgggttctttctgaa
tttaaatcagggaaaagtcctattatgacagctactgatgttgctgctcggggcttagat
gtcaaggatgtgaagtatgtcattaactatgactttccggggtcgctggaggattatgtc
catcgtattggtcgaactggcagggctggagcaaaaggaacagcctacacctttttcact
gcagctaatgccagatatgccaaggaacttatcaatattttagaagaagctggacaaaag
gtcagctctgaattagctgcaatgggtcgtggtgcgccacccccttcttcgggttaccgt
gatagatataaggggtttgggggtggccgttcgtggagctga
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