Phragmites australis (common reed): 133915449
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Entry
133915449 CDS
T10575
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
paua Phragmites australis (common reed)
Pathway
paua03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133915449
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paua03019
]
133915449
03012 Translation factors [BR:
paua03012
]
133915449
Enzymes [BR:
paua01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
133915449
Messenger RNA biogenesis [BR:
paua03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
133915449
Translation factors [BR:
paua03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
133915449
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
dsrm
AAA_22
nSTAND3
ATPase
T2SSE
ABC_tran
AAA_19
AAA_23
NACHT
AAA_16
ATPase_2
Myosin_head
Motif
Other DBs
NCBI-GeneID:
133915449
NCBI-ProteinID:
XP_062214587
LinkDB
All DBs
Position
4:6362428..6369591
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AA seq
1153 aa
AA seq
DB search
MRRGLRRGLGILFVPIPNRPSRPPIPPAALLLLPRRLNDFSRRPFCSFPGGGRAVEQFSD
DEYDHEYEDLRPSSSVANIDEWRWKLSMLQRNEEEQEIISRDRRDRRDYDQIANLAKRMG
LYSEMYGKVVVASKVPLPNYRPDLDDKRPQREVVIPLSLQRRVEGLVQEHLDRALLPLDK
SGGKMESGSEMAEKADNVNLNEQHDSLLDRSVMEKILQRKSIRMRNFQRSWQESPEGVKM
LEFRKSLPAYKEKERLLAAIARNQVIVISGETGCGKTTQLPQFVLESEIESGRGAFCNII
CTQPRRISAMAVAERVSTERGENLGESVGYKVRLEGIKGKDTHLLFCTSGILLRRLLSDR
NLNGVTHVFVDEIHERGMNEDFLLIVLKDLLSRRRDLRLILMSATLNAELFSSYFGGAPT
IHIPGFTHPVRAHFLEDILERSGYKLTSSNQLDDYGQDKVWKTQRQLLPRKRKNQITTLV
EDALKNSSFETYGSRTRDSLANWNPDCIGFNLIEAVLCHICRKERPGAVLVFMTGWDDIS
CLRDQLKAHPLLGDPNRVLLLACHGSMATSEQRLIFENPPPNVRKVVLATNMAEASITIN
DVVFVVDCGKAKETTYDALNNTPCLLPSWISKASSRQRRGRAGRVQPGECYHLYPRCVYD
AFAEYQLPELLRTPLNSLCLQIKSLQVGSIGEFLSAALQPPKPLAVQNAVEFLKMIGALD
GNESLTDLGRYLSMLPVDPKLGKMLIMGAVFRCIDPVLTVVAGLSVRDPFLLPQDKKDLA
GSAKSRFSAKDYSDHMALVRAYEGWKDAEREGSGYEYCWRNFLSAQTLQAIHSLRKQFSY
ILKDAGLIDSDANTNNSLSHNQSLARGIICSGLFPGITSVVHRENSMSFKTMDDGQVLLY
ANSVNAKYQTIPYPWLVFGEKVKVNAVFIRDSTGVSDSILILFGGAVTKGSMAGHLKMLD
GYIDFFMDPSLSECYLQLKEELDKLIQQKLEDPNFDIHKEGKYILFAAQELAAGDLCEGK
FVFGRETSRARLRSNEGDGKSNIIKDGMNPKSLLQTLLMRAGHTPPKYKTKHLKTNEFRA
MVEFKGMQFVGKPKQNKQLAERDAAIEALGWLTQTSGVKPQDEGDDDSPLDLTDNMLKLL
TRPRRRSKNNSRK
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
atgcgccgcggcctgcgccgcggactgggcatcctcttcgtcccaatccccaaccggccc
agccggccgccgatccctcccgcggctctcctcctcctcccgcgccgcctcaatgacttc
tcccgccgtcccttctgcagcttccccggtgggggccgcgccgtcgagcagttctccgat
gacgagtacgaccacgagtacgaggacctcaggccgtcgtcgtcggtggcgaacatcgac
gagtggaggtggaagctgagcatgctgcagcgcaacgaggaggagcaggagatcatctcc
agggaccggagggaccgccgggattacgaccagattgccaacctcgccaagaggatgggg
ctctacagtgagatgtatgggaaagtcgttgtcgcaagcaaggtcccgctgccaaactac
aggccagacctggacgacaagcggccgcaaagagaggtggtgatcccgctgagcttgcag
aggagggttgaaggacttgtgcaggagcatctagaccgtgcactcttgccactggataaa
agcggtggcaagatggaaagtggctctgagatggctgagaaagctgataatgtgaacctg
aatgagcagcatgattctctgcttgatcggtcagtcatggagaagatacttcagaggaag
agcattcggatgcgcaattttcagaggagttggcaggaatcacctgaaggtgttaagatg
ctagaattccggaaatcacttccagcatacaaggaaaaagaaaggcttcttgcagccatt
gcccgcaatcaggtcatagtaatttctggggagaccgggtgtggtaaaacgacacagctg
cctcaatttgtattagagtcagagatagagtcaggaagaggggccttttgtaacataatt
tgtacacagccacgaagaatatctgcaatggcagttgcggaaagagtatccaccgagaga
ggagagaaccttggtgaatcggttggctataaagttagattggagggaataaaaggaaaa
gacacacatttgcttttctgcaccagtggcattttactaagacgattgctgagtgaccga
aacttgaatggtgtgactcatgtatttgttgatgaaatacatgaaagaggcatgaatgaa
gatttcctattgattgtactaaaagacctattatcacggcgccgtgatttgaggttgata
ttgatgagtgctactctaaatgcggaactgttctcaagttattttggaggagcgccaact
atccacattcctggattcacacatccagtgagggcacactttctggaagatatattagag
aggtcaggatacaagttgacctcaagcaatcaacttgatgattatggccaagataaagtc
tggaaaacgcagaggcagctgttgcccaggaaaaggaaaaatcaaatcaccacacttgtc
gaggatgcccttaaaaattcaagcttcgagacatatggttccaggacacgcgattctctg
gcaaattggaatcctgattgcatagggtttaacctcatagaggctgttctgtgccacata
tgtcgcaaagagcgacctggtgctgttttagttttcatgactggatgggatgatattagt
tgcttgagggatcaattaaaagcacatccattgctaggtgatccgaatagggttttactg
cttgcatgccatggttccatggctacttctgagcagagactaatttttgagaatccacct
cctaatgttcggaaagtagtccttgccacaaacatggcagaagcaagtattacaatcaat
gatgtcgtttttgtcgtggattgtgggaaagcaaaggaaaccacatatgatgctctaaac
aatactccctgcttactcccctcatggatttcaaaagcttcatcccgtcagaggaggggc
agagctggtcgtgtgcaacctggagaatgctatcatctctaccctagatgtgtgtatgat
gcatttgcggagtaccagcttccagagcttcttagaactcctttaaattcactatgtttg
cagataaaaagtttgcaagttggtagcattggggagttcctatcagctgccctacagcct
ccaaaaccactagcggtccaaaatgctgtggaattcctgaagatgattggggcattagac
ggaaatgagagtcttactgatctcggacgatacctttccatgcttccagttgatccgaaa
ttaggaaagatgcttataatgggtgcagtttttcgctgcatagatcctgtacttactgtg
gtcgctggactgagtgttcgggatcctttcctgttgccacaggataagaaggatttggca
ggatccgcgaaatcaagattctcagcaaaggattatagcgatcatatggcccttgttcgg
gcttatgaaggatggaaggatgcagagagagaagggtctggttatgaatactgttggaga
aatttcctttctgctcaaacactacaagccatccactctcttcggaagcaattcagctat
attttaaaggatgctggtttgatagactctgatgcaaatacaaataatagtttgagccat
aatcaatcattggcccgtggtatcatatgttctgggctttttcctgggataacatctgtt
gtgcatcgagaaaactccatgtcctttaagaccatggatgatggccaagttcttctttat
gctaattcagtgaatgcaaagtaccagacaattccatatccatggctggtctttggtgag
aaagtgaaggtgaatgctgtcttcatccgtgattcaactggagtatcagactccatactg
atcttatttggtggtgctgtcacaaaaggaagcatggctgggcacttgaagatgctcgat
ggctacattgatttctttatggatcccagcctgtctgaatgctacttgcaacttaaagaa
gaacttgataaacttatacaacagaagcttgaagacccaaactttgacatccacaaggaa
ggcaagtacatcctattcgccgcacaagagctcgccgccggcgacctatgcgaaggaaag
ttcgtgttcggccgcgagacaagcagggccaggctccggagcaacgagggcgacggcaag
agcaacatcataaaggacggtatgaacccgaagagcctgctacagacgctgctgatgcgc
gccgggcacaccccacccaagtacaagacgaagcacctcaagaccaacgagttcagggcc
atggtggagttcaaggggatgcagttcgtggggaagccgaagcagaacaagcagctcgcg
gagcgggacgcggcgatcgaggcgcttgggtggctgacgcagacgtctggcgtgaagccg
caggatgagggcgacgatgattcgccgctggacctgactgataacatgctgaagctgctc
actagaccgaggaggcgatcgaagaataattcgagaaaatga
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integrated database retrieval system
