Phragmites australis (common reed): 133915911
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Entry
133915911 CDS
T10575
Name
(RefSeq) transcription initiation factor TFIID subunit 4b-like isoform X1
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
paua Phragmites australis (common reed)
Pathway
paua03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
133915911
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
paua03021
]
133915911
03036 Chromosome and associated proteins [BR:
paua03036
]
133915911
Transcription machinery [BR:
paua03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
133915911
Coactivators
SAGA/TFTC/STAGA complex
133915911
Chromosome and associated proteins [BR:
paua03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
133915911
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TAF4
RST
SPMIP10-like
Motif
Other DBs
NCBI-GeneID:
133915911
NCBI-ProteinID:
XP_062215288
LinkDB
All DBs
Position
4:complement(23295617..23317904)
Genome browser
AA seq
873 aa
AA seq
DB search
MDPIMKLLEDDEDESLHSGADVEAFTAALNREVEASTSAPAASSSQPMDHGAGILPQENN
ASLNHSHGQWQDSVKNEIANQESQQEKAHLHHGKDQSSRPEVISEGSENEHLHANAPKEC
DAPKVKQEPGTTSQQSISAQQQPLHQMKSQQTPGTNQTNSATTMVKAPVVTFHMLIPILR
HHLDKDRDMQVQSIFAKLRKNEISKEHFLKVVRSIVGDKLLKQAAAQYQMQHTAQAQRNP
QTNPSNYSLVNQVSGLQNVSSGSMPGDEQKAYPVAHPIPVNQVIDSPIPPQFCPSSLGQM
QSNKGYTASESNVHKANEAGNNSDGKGVHMLYTRPPNIHSVPVQPMQHHVQCPQTPSPVL
GTNNFHTHPFPRPVGGPVVSLRPQMVDSNQRAQLVQVVATTMSGSVPTRSTVSGNVPTNQ
SARQQSAIKEQKSNSFTPTPHMNMESVSQHSESTQNSFVALHAKQISSVIGSSKGGSVLE
NKSLALNASKSLAAASSSQTHQSHGAQEPKMQIQSSVQAPPAPAASKTPQKKASSGQKKP
LEALGSSPPPSNKKQKASGGFHDQSIDHLNDVTAVSGVNLREEEEQLFSAPKEESRVSEA
ARKVVQLEEEKLILQKGPLTKKLAEIMRKCNLKVIGTDVERCLSMCVEERLRGFISNIIR
LSKQRVDVEKSRHRFYPLSSDVRSHIMRVNREAREQWDKKQAEDAERIRKHNDGDGNTNV
DSEKDKNEARATSKHSKTYNEEDDKMRTTAANAAARVAAGGDDMLSKWQLLAERNKQRSE
GGDGSSGSLPGNMLPHKPSQKSGKDSREQQEVEKRGYVAMLGPGGVRRSPVTKVARSITV
KDVIAALEREPQMSKSSLLFQLYGRSSAESAAK
NT seq
2622 nt
NT seq
+upstream
nt +downstream
nt
atggatcccatcatgaagctcctcgaggacgacgaggacgagagcttgcactcgggcgcc
gacgtcgaggccttcacggcggcactcaaccgcgaggtggaggctagcaccagcgccccc
gccgcctcgtcatcccagccgatggatcacggcgccggtattttacctcaggaaaacaat
gcatcattaaaccacagtcatggccagtggcaagattcagtaaagaatgaaattgcaaac
caggaaagccaacaagaaaaggcacatttacatcatggaaaagatcagtcatccagacct
gaagtgatttctgaaggttctgaaaacgaacaccttcacgctaatgcaccaaaagaatgt
gatgcgccaaaggtaaagcaagagcctggaaccacttcccaacaaagtatttctgctcag
cagcagcctttgcaccaaatgaagagtcaacaaacaccaggcacgaaccaaacaaatagt
gctactacgatggtaaaagccccagttgttacatttcacatgttaatcccgattttgagg
caccaccttgacaaagacagggatatgcaagtccagtccatttttgcaaaattgcggaaa
aatgaaatcagcaaggaacacttcttgaaagttgtaaggagtattgttggtgataagttg
ctcaagcaagctgctgcgcaatatcaaatgcagcacactgctcaggcacaacggaaccct
cagacaaatcccagcaactattcgttagtgaatcaagtttctggtctgcagaatgtctcc
agtggttctatgccaggagatgagcagaaagcatatccagtggctcaccccatccctgta
aaccaagttattgacagcccaataccacctcaattttgtccttcctcattaggccaaatg
cagagtaataagggttatacagcttcagaaagcaatgtgcataaggctaatgaagcgggt
aacaattcagatgggaaaggagtgcatatgctatatacccgtccacccaatatccactca
gttccggtgcaaccaatgcaacatcatgtgcagtgtccacaaacgccttcacctgttctt
gggacaaataactttcatacacatccatttccacggccagttggaggtccagttgtatca
cttagaccacaaatggtagattccaatcaaagagcacaattagtccaggtagttgctacc
acaatgtctgggagtgtgccaacacgatccacagtgtctggaaatgtgccaactaatcaa
tctgcacggcaacaatcagcaatcaaggagcagaaaagtaactctttcactccaacacca
catatgaatatggaatctgttagccagcactctgaatccacacagaattcttttgttgcg
ttgcatgcgaaacaaatcagttcagtcattggatcttcaaagggtggcagtgttttggaa
aacaaatcacttgcgttgaatgcttctaagtctttggctgcagcaagctcaagtcagact
catcaatctcatggcgctcaagaacctaagatgcagatccaatcttccgtgcaagcacct
cctgctccagcagcttctaaaacacctcaaaaaaaggcttcttctggacagaaaaagcct
ttggaagcattaggctcatcccctccaccgtccaacaaaaagcagaaggcatctgggggt
tttcatgatcaaagcattgaccatcttaatgatgtcacagcagttagtggtgttaatctg
agggaagaagaggaacaacttttctctgctccaaaggaagagagtcgagtttcagaagct
gctcggaaagttgtacaattagaggaagaaaaactcatcctacaaaagggacccctgaca
aagaaattagcagaaatcatgagaaaatgtaatttgaaggtcatcggcactgatgtggag
cgttgtctatctatgtgtgttgaggagcggttacgaggatttataagcaatataataagg
ctctcaaaacagagggttgatgttgaaaaatcaaggcatcgtttttaccctttatcttca
gatgttcgcagtcatataatgagggtgaaccgagaagctagagaacagtgggacaaaaag
caggctgaagatgctgaaagaatcaggaaacacaatgatggagatggcaatacaaatgtt
gattcagaaaaagacaagaacgaggcccgtgccacatcaaagcattctaagacttacaat
gaggaagatgataaaatgagaactacggctgcaaatgctgctgcgcgagttgcagctgga
ggagatgacatgctgtcaaagtggcaattgctagctgagcgaaataaacagagaagtgag
ggaggtgatggttcttctggttccttaccaggtaatatgttgcctcacaagccttcacaa
aaatccgggaaagactcaagggagcagcaggaagttgaaaagagaggctacgttgctatg
cttggacctggtggtgttagaaggtcaccagtcacaaaagtggcgcggagcattacagta
aaggatgtgatagcagcactggagcgagagcctcagatgtcaaaatcctccttgcttttc
cagctatacgggagatcctcggcagaatcggctgcaaaataa
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