Phragmites australis (common reed): 133915914
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Entry
133915914 CDS
T10575
Name
(RefSeq) probable ubiquitin conjugation factor E4 isoform X1
KO
K10597
ubiquitin conjugation factor E4 B [EC:
2.3.2.27
]
Organism
paua Phragmites australis (common reed)
Pathway
paua04120
Ubiquitin mediated proteolysis
paua04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
133915914
04120 Ubiquitin mediated proteolysis
133915914
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
paua04121
]
133915914
Enzymes [BR:
paua01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
133915914
Ubiquitin system [BR:
paua04121
]
Ubiquitin ligases (E3)
U-box type E3
133915914
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ufd2P_core
U-box
RasGEF_N_2
Motif
Other DBs
NCBI-GeneID:
133915914
NCBI-ProteinID:
XP_062215292
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All DBs
Position
4:23504536..23513180
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AA seq
1036 aa
AA seq
DB search
MASPSPASAPPQRTPDEVEDIILRKILLVSLAPPTNPSPAVAYLELTAAELLSESRPLLA
LRDAAERLLIDRLSLPDPAAASPSPFAFLAAAFRRAADEARKISTIRDAALRARLAASIA
HLRGLILSYARIVAGNPDTFPAPPNAPHPAAELLVFLLAEAADALDPTPAPGAPPPPGFL
DEFFGSADYETIEPAMGELYERLRKSVEKVSPLGDFQRPLRVLRRLVGIPNCAKALVNHP
KWIPKNQIMLIGEGRVMELSSVLGAFFHVSAICDREFASKPDVGQQCFSEASSRRPADLL
SSFTTIKSVMNGLYDGLKGVILILLKNLDTRENVLEYIAEVINKNAARSGMQVDPLKCAS
SGMFVNLSAVMLHLCEPFLDNMESKKDKIDVNYLFFNNRIDFKNLTAINASSEEVSSWIE
SRNNKHAQNVSGEARFVESQEATSSGKNSTTSLLSKGGTLVRCSKNENFSFICECFFMTA
RVLNLGLLKALSDLKHIAQQHTRFEDDLESNRAMRDQGGGSPQLEQDISRLEKMVEILSQ
DKLCYEAQILRDGSFLQRALSFYRLMILWSVDLVGGYKMPLPSQCPKEFSCIPEHFLDDA
MDLLVLTSRIPKALESFALDDFLNFIIMFMASSSYIKNPYLRAKMVEVLNCWTPQRSGLN
STASLFEGHQLCLDYLVMNLLTLYVDIEFTGSHTQFFDKFNIRHNIAELLEYLWDVPSHR
NAWKQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKEIEAEMANTIEWEHRPAQE
REERLRVFHQWENIVRFDMKLANEDVGMLAFTSEQIPAPLLLPEMVERVSSMLNYFLLQL
AGPQRKSLTVKDPEKYEFKPKQLLKQIATIYVHITRGDKEAIFPAAISKDGRSYNDQLFA
SAANILWKIGGDPQIIQEFMQLAVKAKVAVSEAMDAEAILGDIPDEFLDPIQYTLMKDPV
ILPSSRVTIDRPVIIRHLLSDSTDPFNRSHLTRDMLIPNTELKAQIEEFVRSQQSRKRTA
AKSEIGESDGTADMAK
NT seq
3111 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccccgtcgccggcttcggcgccgccccagcgcacgcccgacgaggtggaggac
atcatcctccgcaagatcctcctcgtctccctcgcgcccccgaccaaccccagccccgcc
gtcgcctacctcgagctcaccgccgccgagctcctctccgagtcgcgccccctcctggcc
ctgcgcgacgccgctgagcggctcctcatcgaccgcctctcgctcccggacccggccgcc
gcatccccttcgcccttcgccttcctcgccgccgccttccgccgcgccgccgatgaggcc
cgcaagatctccaccatccgcgacgccgcgctgcgggcgcgcctcgccgcctcaatcgcg
cacctccgcgggctcatcctctcctacgcccgcatcgtcgctgggaaccccgacactttc
ccggcgccccccaacgcgccccaccccgccgccgagctcctcgtcttcctcctcgccgag
gcagccgatgcgctcgatcccaccccggcccccggcgcgccgccgccgccgggcttcctc
gatgagttcttcggcagcgcggattacgagaccatagagccggccatgggggagctgtac
gagcggcttaggaagagcgtcgagaaagtgtcgcccctcggtgacttccagaggcccctg
cgggtgctcaggcggctcgtgggtatcccgaactgcgccaaagctctggtgaatcacccc
aagtggataccgaagaatcagattatgcttatcggggaagggagggtcatggagctctcc
agcgtgcttggggccttcttccacgtcagcgcgatctgtgaccgtgagtttgcgagcaag
cctgatgtcgggcaacagtgtttctcagaggcatcttcacgtcggccagctgatttgttg
tcatctttcacaacgatcaagagtgttatgaatggcttgtatgatggccttaagggtgtt
attctaatcctccttaaaaatttggatactcgagaaaatgttcttgagtatattgcagaa
gtgataaataagaatgctgccagatctgggatgcaggtagaccctttaaaatgcgcgagt
tcaggtatgtttgtgaatcttagtgctgtgatgctccatctatgcgagccttttctggat
aacatggaatcaaagaaagacaaaattgatgtcaattacctcttcttcaacaatagaatt
gatttcaagaatttgacagcaataaatgcttcttcagaagaagtatcatcttggatagag
agcagaaacaacaagcatgctcaaaatgtcagcggagaggctcgctttgtggaatcacag
gaagccacaagctccggcaaaaatagcacaacttctcttctttctaaaggcgggacacta
gttaggtgctcaaaaaatgagaatttctcatttatttgcgaatgtttcttcatgactgcg
agggtacttaatctggggctgctgaaagctctatcagacttaaaacatattgctcagcaa
cacacaaggtttgaggacgacttggaatcaaacagagcaatgagagatcaaggagggggt
tcaccacagcttgagcaagatataagtcgattggagaagatggttgagattttatcacag
gacaaactctgttatgaagctcagatactacgagatggttcattccttcaacgcgcattg
tctttctacagattgatgatattgtggtcagtagaccttgttggtggatataagatgcct
ttgccatcacaatgccccaaggaattttcctgcattccagagcattttcttgacgatgca
atggatttacttgttctaacctctagaattccaaaagctttggaaagcttcgcattggat
gactttctcaatttcataattatgttcatggcaagctcttcttacattaaaaatccttac
ctaagagcaaagatggttgaagttttgaattgctggacaccacaaagaagtggcttgaat
tctacagcctcgttatttgaggggcaccaactatgtcttgattaccttgtcatgaatctt
ctaacactttatgtggatattgaattcactggctcccacacccaattctttgacaagttc
aatattcgacataatattgctgagcttctggagtatttatgggatgttcctagtcatcga
aatgcatggaaacaaatagctaaagaggaggagaagggtgtatacttaaattttctgaac
ttccttatcaatgatagcatctatcttcttgatgagagcttgaacaaaattctcgaactg
aaagaaatagaggccgaaatggctaacaccattgagtgggagcacagaccggcccaagaa
agagaagagcggctgcgtgtatttcatcagtgggagaatattgttcgattcgacatgaag
ttggccaatgaggatgttgggatgcttgcattcacttcagaacaaattccagcacctctc
cttctccctgaaatggtggaaagggtatcaagcatgcttaattactttctcttgcaactt
gctggtccccagaggaaatctttgactgtaaaggatcccgagaagtatgagttcaagcca
aagcagcttttgaaacagattgccaccatctatgtccatatcacaaggggtgataaggaa
gctatcttcccagctgcaatctcgaaagatggcagatcatacaatgaccagttgtttgct
agtgcagctaatattttgtggaagattgggggagatccccaaatcatacaggagtttatg
caacttgctgttaaggcaaaagtcgctgtttctgaggccatggatgctgaggcgattctt
ggggatataccagatgaatttcttgatccaattcagtatactctgatgaaagatcctgtg
atactgccatcatctagggttacaatagatcgacctgttattatcaggcatttactaagt
gattctaccgatccgtttaaccgctctcacctcactcgagacatgttgataccaaatact
gagctcaaggcacagattgaagaatttgttaggtcccagcagtcgagaaaacgaacggct
gccaaatcagagattggtgaatcggatggcactgctgatatggccaagtga
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