Phragmites australis (common reed): 133916001
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Entry
133916001 CDS
T10575
Name
(RefSeq) serine/arginine-rich splicing factor SC35-like isoform X1
KO
K12891
serine/arginine-rich splicing factor 2/8
Organism
paua Phragmites australis (common reed)
Pathway
paua03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133916001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
paua03041
]
133916001
Spliceosome [BR:
paua03041
]
Common components
Common spliceosomal components
SR proteins
133916001
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
Nup35_RRM_2
RRM_5
RRM_Nup35
Motif
Other DBs
NCBI-GeneID:
133916001
NCBI-ProteinID:
XP_062215444
LinkDB
All DBs
Position
4:28178440..28181914
Genome browser
AA seq
227 aa
AA seq
DB search
MSHFGRSGPPEIRDSFSLLVLNVSFRTTADDLFPLFDRYGEVVDIYIPRDRRTGDSRGFA
FVRYKYEDEAQKAVDKLDGRMVDGREIMVQFAKYGPNAEKIHKGRIVEEIPKPRGRSRSR
SPRRRYRDDFRDRDYRRRSRSRSRERYERDSYKDGDYRHGSRTRGIIPDYDRKHNRYSSS
NIGSRSPVRRSPSRSRSYSPREAPSSREGTPSRPRDDRSPHSGSPSA
NT seq
684 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcatttcgggcgctccgggccgccggagatccgcgacagcttctccctcctcgtc
ctcaacgtctccttccgcactacggctgacgacctcttcccgctcttcgaccgctacggt
gaggtcgtagacatctacatcccgcgcgaccgcaggactggggactcgcgagggttcgcg
ttcgtgaggtacaagtacgaggacgaggcgcagaaggcagttgacaagcttgatgggagg
atggttgatgggagggagatcatggtgcagtttgcgaagtatggccccaatgctgaaaag
attcataaggggaggattgtggaagaaattccgaagccaaggggtcgttccagaagccgc
agtccaagacggaggtatcgagatgattttcgggacagagactatagaaggcgaagccgg
agcagaagtagggagagatatgaacgggacagctacaaagatggagattatcgtcacggt
agcaggactcgtggtattatccccgattatgacagaaaacataacagatacagttcttca
aatattggcagccgctcacctgtgcggagaagtcctagccgtagcagaagctactcacct
cgtgaggcgccttcttctcgtgaaggaactcctagcaggcccagggatgaccgctctcca
cattctggaagcccttcagcgtga
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