Phragmites australis (common reed): 133916015
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Entry
133916015 CDS
T10575
Name
(RefSeq) uncharacterized protein LOC133916015
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
paua Phragmites australis (common reed)
Pathway
paua03013
Nucleocytoplasmic transport
paua03015
mRNA surveillance pathway
paua03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133916015
09122 Translation
03013 Nucleocytoplasmic transport
133916015
03015 mRNA surveillance pathway
133916015
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paua03019
]
133916015
03041 Spliceosome [BR:
paua03041
]
133916015
Messenger RNA biogenesis [BR:
paua03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
133916015
Spliceosome [BR:
paua03041
]
Complex C
Other components
EJC/TREX
133916015
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_ACIN1
RSB_motif
SAP
Motif
Other DBs
NCBI-GeneID:
133916015
NCBI-ProteinID:
XP_062215459
LinkDB
All DBs
Position
4:28654607..28659913
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AA seq
725 aa
AA seq
DB search
MSSYPVLNNRPIDQWRVTDLKDELRKRRLPVKGLKEELVRRLCDSIQSEQAANEAVEDVG
VNVADDQLSDAIVTQETTVTITEVPQETVVHVTQQIEVPRTEVSHEFTIPATGALPSVDV
EASLSEAEAAEGEAPESIDVENSAFQEVQPHTETNVEPVLEKTSEVRNNETIIVNDATST
DVKSDLTPSEVNSDVTEASKIQQEDSAPARVDAFTSDTDPMDSDVAPAAPISNDGEKMVP
NNDLGDSFSMSDEERKDSKLVNEDREPIVSKPNNQVPEVTPDLGSQIKCELISSDDISTN
KKNYIEDNLNANNFDLELEVKPMMVEPSPGITSLGGDLQPLDDEKELVKNQSSLEDIDST
ANVDSYKKDSPEGGSPEKLNLDRSSGDESMEEDVMEIKQVESNMKSDDLRGKTDLSSEDV
KEVTLPGSVVEASSVDIKDVIAEEKPAALAEKRKLEAEEIVANIEPIKRQRRWTADSGKV
PERRTLSQTYSDAPKDVFQPALKRSFGRSDSTASEDSPKERIVPPPQKPATTSLRIDRFV
RPFTLKAVQELLGKTGSVQNFWMDHIKTHCYVTFSSVDEAVATRNAVYNLQWPLNNGNHL
VAEFVDPQDVRLKLESPPTPAAPISPAAAKVPPVQQAQANQSVPRQAATPREHLPPPLPL
AKPPTSDPASARERLPPTPKKPEPPVVTLDDLFRKTQSSPRIYYLPLSEEEVAAKLAEPG
KGKKE
NT seq
2178 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcatatcctgtgctaaacaaccgaccgattgatcagtggagagttactgatctg
aaagatgaactccgtaagaggaggctccctgttaaaggtttgaaagaggaacttgtgagg
cgactctgcgactccattcagagtgaacaagcagctaacgaagctgttgaagatgtggga
gtgaatgtggcagatgatcagctgtctgatgcaattgttacccaggaaactacagttact
attacagaagttcctcaggaaactgtggttcacgtcactcagcaaattgaagttcctcgc
accgaagttagtcacgaattcacgattcctgccactggagccctccccagtgttgatgtt
gaagcttccttaagtgaggccgaagcagccgaaggagaagcaccagaatcaattgatgta
gaaaattcggcatttcaagaagtgcaacctcatactgaaactaatgttgagcctgttctc
gagaagacctcagaggttcgcaataatgagacaatcattgtcaatgatgcgaccagtact
gatgtgaagtcagacctgaccccttctgaagtcaactctgatgtcaccgaagcaagcaaa
attcaacaagaggattcagcaccagcacgtgtggatgccttcacatcagatactgatcct
atggatagtgatgttgccccagctgcaccaataagtaatgatggagagaaaatggtacct
aacaatgatttgggtgacagtttttcaatgtctgacgaagagcgcaaagattctaagctt
gtgaacgaggaccgggagcccattgtatcaaaaccaaataatcaggtacctgaggttacc
ccagatttagggtctcaaattaagtgtgagttgatttctagcgatgatatatcaactaac
aaaaagaattatatagaggataacttgaatgctaataattttgatttagagttagaggtt
aagccgatgatggtcgaaccatcacccggcattacttccttaggtggagatttgcaacca
ctggatgatgagaaagagttggttaagaaccagtcatctttggaagacatagattccaca
gctaatgtggactcatacaagaaagatagtcctgaaggtggttctccagagaaattaaat
ttagataggagttcaggtgacgagtcaatggaggaggatgtcatggagattaagcaagtt
gagtccaatatgaaatctgatgatctcagaggaaagactgaccttagctccgaagatgtg
aaagaggtgaccctccctggttctgttgttgaggcttcctctgttgatatcaaggatgtt
atagctgaagaaaagccagcagctttagcagaaaagaggaaacttgaagctgaagaaatt
gttgcaaacattgaaccgatcaaacgacagcgccgatggactgcagacagtggcaaagtt
ccagagagacgaacattaagtcaaacttattctgatgctcctaaggatgtttttcagcct
gctttaaaacgttcttttgggaggtctgattcaacggctagtgaagattctccgaaggag
cggattgtgccaccgccccagaaacctgcaacaacttccttgagaattgaccgatttgta
cgcccgtttaccctgaaagctgtgcaagagcttcttggtaaaactggatcagtacaaaac
ttctggatggatcatatcaagacccattgctatgttacattctcctcggtggatgaagct
gtggctactaggaatgctgtctacaacctacagtggcccctgaacaatggcaatcatttg
gttgctgaatttgttgatcctcaggacgtgaggctcaagcttgaatcccctcccacgcca
gcagctcctattagcccagctgctgcaaaggtgcctcctgttcaacaagctcaggctaat
caaagtgtgccacgccaggctgctacaccaagggagcatttgccaccaccgctgcctctt
gctaagccccctacatctgacccggcatcagcaagggagaggcttccacccactccaaag
aagcccgaacctcctgtcgtgacacttgatgatctcttcaggaagacacaatcctctcca
aggatttactatctgcctttatcagaagaggaggtggcagccaagcttgccgaaccgggc
aaaggaaaaaaagaatag
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