Phragmites australis (common reed): 133916104
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Entry
133916104 CDS
T10575
Name
(RefSeq) probable E3 ubiquitin-protein ligase RHC1A
KO
K11982
E3 ubiquitin-protein ligase RNF115/126 [EC:
2.3.2.27
]
Organism
paua Phragmites australis (common reed)
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
paua04131
]
133916104
04121 Ubiquitin system [BR:
paua04121
]
133916104
Enzymes [BR:
paua01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
133916104
Membrane trafficking [BR:
paua04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Rab associated proteins
133916104
Ubiquitin system [BR:
paua04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
133916104
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
Zn_ribbon_19
zf-C3HC4_2
zf-C3HC4
zf-rbx1
zf-RING_UBOX
zf-C3HC4_3
zf-RING_11
zf-ANAPC11
Rad50_zn_hook
zf-RING_5
Zn_ribbon_6
zf-Nse
DUF7129
HypA
zf-RING_16
Motif
Other DBs
NCBI-GeneID:
133916104
NCBI-ProteinID:
XP_062215597
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All DBs
Position
4:31435733..31437959
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AA seq
291 aa
AA seq
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MSGGRQSYWCYQCRQRVRPHGREMVCPYCDSGFVAEMDDVDALMSHFIEMDPDFHRDPRF
GIMEAISTVMRHGMAGMNREVDVRGRPNIISDLEMEFGSGPWLLFRGQLPGHLSEDNGFD
MFINGRRGVGMRRANIADYFVGPGLDDLIEQLTQNDRRGPPPAAQSSIDAMPIVKIAQRH
LSGDSHCPVCKEKFELSSEAREMPCKHLYHSDCIVPWLEQHNSCPVCRDELPTQDSTGAS
FSRASFSRSRSISQSQSSSSSSTRGRTNGRRRNLFSFMWPFRPSSSSSSSR
NT seq
876 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggtggtagacaatcatactggtgctaccaatgcagacagcgggtgagacctcat
ggccgggagatggtgtgcccctactgtgattccggatttgtggctgaaatggatgatgtg
gatgctctcatgagccacttcattgagatggatcccgatttccatcgtgacccaaggttc
gggatcatggaggcaatctccaccgtgatgcgacatggtatggcggggatgaatagggag
gttgatgtcagaggaaggccaaacataatttctgacctggaaatggagtttggctcaggg
ccatggttgctcttccggggccagctccctggtcatctctcagaggacaatggtttcgac
atgttcattaatggacggcgtggtgttggcatgcggagggcaaacattgcagactacttt
gttggacctggattggatgatctcattgagcagttgactcagaatgatcgtcgaggacca
ccacctgccgcccagtcctcgattgatgctatgcccattgttaagatcgctcaaaggcat
ctcagtggagactcacactgccctgtctgtaaggagaagttcgagttgagttcagaagcg
agagagatgccatgcaagcatttataccactccgactgcatagttccttggctagagcaa
cataattcctgccctgtttgccgtgatgagctgccaacacaggattctactggagcaagt
ttctcacgagcaagtttctcacgctcaagatcgatcagccaaagccaaagctcaagtagt
tcaagcactcgtgggagaaccaatgggcgtcgaaggaacctgttctcgttcatgtggcct
ttccgcccgtcaagttctagctctagttctcgttag
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