Phragmites australis (common reed): 133916256
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Entry
133916256 CDS
T10575
Name
(RefSeq) uncharacterized protein LOC133916256 isoform X1
KO
K11797
PH-interacting protein
Organism
paua Phragmites australis (common reed)
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
paua04121
]
133916256
Ubiquitin system [BR:
paua04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
133916256
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
Beta-prop_WDR75_1st
Beta-prop_EML
Beta-prop_SCAP
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
NBCH_WD40
Beta-prop_IFT122_1st
Beta-prop_RIG_2nd
Beta-prop_TEP1_C
Bromodomain
WD40_MABP1-WDR62_1st
Beta-prop_DCAF4
Beta-prop_EIPR1
Beta-prop_WDR35_TULP_N
Ams1-like_1st
VPS8_N
Beta-prop_HPS5
WDR90_beta-prop_4th
Motif
Other DBs
NCBI-GeneID:
133916256
NCBI-ProteinID:
XP_062215844
LinkDB
All DBs
Position
4:35874761..35890946
Genome browser
AA seq
1712 aa
AA seq
DB search
MSPNFLYPGGVVGMSFGKHPSGNAASISMAPLDFPSQGQELEKVNPVNSVMSADVASMAD
VHIDMREIYFLIMHFLSLGPFKRTFGEMCNELLEHQLLPRRYHAWYSRGGFYSGEENDDG
ISVPLGYLKLVERYPHIGKDHLVKLLKQLMATSCHPHSLVGGGSPNAADVPTLLGSNSFS
LLASDRGRQDKETPRLPSYLRWPHIQTDQVHGLSLREIGGFTKHCRAPSVRASCYAIAKP
STLVEKMQIIKRLRGHQNAVYCATFDRVGRYVITGSDDRLVKIWAMETTFCLASCRGHEG
DITDLAVSSNNAVVASSSNDFVIRVWRMPDGMPIAVLKGHTGAVTAIAFSPRPGAAFQLL
SSSDDGTCRIWDARYSQEPLRIYIPKPPDAAPGKSGDASSSAAQVQQTNHQILCCAFNAN
GTVFVTGSSDTFARVWNACKSSSEEHDQPNHEMDLLSGHENDVNYVQFSGCAVASRSFSS
DSSHTTKEESSLKLRNSWFTHNIVTCSRDGSAIIWVPRSRRSHGKVGRWTRAYHLKVPPP
PMAPQPPRGGPRQRYQPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNASDGSLVHSLIGH
KESTFVLDVHPFNPRIAMSAGYDGMTIIWDIWEGKPVQIYETGHFKLVDGKFSPDGTSLI
LTDEIGQIFIIGTGQGESQKDAKYDQFFLGDYRPLIRDTTGNVIDQETQLIPYRRNMQDL
LCDSSMIPYPEPFQSMYQKRRLGTLGIEWRPPSVNFAVGPTYNATTGEYQTIPIIDPDRW
EPLLEITDFVELEPENEVISDDTDSEYNGMDEYSSEGEQEILSVDSSGASYSIAEIDADD
PTSAAHLRRSRRKKKKSDPDLVTSSGRRVKKINLDEHDVATVSRPHRCRKSRNGRSSKRK
RSPKSRGLRPQRRAARNARNFLSKMGASTEEDEDDSEGSFSDSELNTDSTEAEQLEWNGQ
LRIGREINCHYDSEDVTQPSWFTETKGNSGTNRKLVLRIPRRDLKIEFPSGSGKAERSAQ
DKAVMSLAPANHESVEPELTIEPGHSSACKAEFTTDGVQTETSDLQDVCAIHSNNSIKWG
EVKMRSSKRCKFSDSAGGMWSTSNNAVSQDVDESGSQEMRHEYSDDIQGRVEQNVQEIQL
AINLDKIQENHSIDEYSVDNLPDKEKITNNNNTRADGENNMEQVRNTSQSKSLKLKFRSR
GSADGANLSDKSRTTAVENITNSEHVKDSVQHDEDSANQHRSADFLNVSRSFPECTDKST
GLHDSKKLDSAKSYTAVYKRSKPNNRKKLDSDEYTNEDSTSISNDGGGYQPPEHSPVTAA
SGRLRRSARRSYAYSGDGTTGDDTSQVKDSYCSHEASTSGRRIVTDVREVMWRSTSKTVG
LRSARNKRDSCNFPDTYLSGKRHQVSVKYSWLMLREHEDSYRYIPQLGDEVLYLGQGHEE
YLEVGRSPDYCPWNRIKGLKAVELCKIQGLDYTTFRGSGESCCKLTVEFVDGTSSGFGRK
FVITLPELVNFPDFLVEKTRYDAAIERNWTHRDKCKVWWRDEGVEGGTWWEGRVLSVKPK
SPDFPESPWEKYVIQYKNDGSDHPHSPWELHDVGNLWAPWKHPHIDLRIRNKLLSQVQNL
QEMSHRNQDRYGVLKLDKVAEKSDFVNRFPVQFSIEVIKTRLDNNYYRTLEAVRHDATVV
TANAQSYFSKSTEMTKKIRKLAEWIEQTFSSL
NT seq
5139 nt
NT seq
+upstream
nt +downstream
nt
atgtctcctaactttttatatccaggcggtgtagtcggcatgtcttttggaaagcaccct
tctggtaatgcggcctccattagtatggcacccttggatttcccaagtcagggtcaggaa
cttgagaaggttaatcctgtgaattcagtgatgtcagctgatgttgcatccatggctgat
gttcatattgatatgagagaaatttactttctcattatgcattttttatctcttggtcca
tttaaacgaacctttggagaaatgtgcaatgaactcctggagcatcaactgctacctaga
agataccatgcttggtattcacgtggtggtttctatagtggtgaagaaaatgatgatggc
atatcagtccctttaggttacctaaagttagtcgagaggtacccccacattggtaaagac
cacttggtaaagcttttaaaacaactgatggctacttcctgccacccgcacagcttggtt
ggaggaggttctccaaatgctgctgatgtcccaacacttcttggctccaactccttttca
cttcttgcatctgataggggcaggcaagataaggaaactcccaggctgccgagttatctc
cgttggccgcacatacagactgatcaagttcatggcctaagtttgagagagattggtggt
tttactaagcattgtcgagctccgtctgtacgtgcatcgtgctatgccatcgcgaagcca
tctacccttgttgaaaagatgcaaattataaagagattgaggggacatcaaaatgctgtg
tattgtgctacttttgatcgtgtggggcgttatgttattactggttctgatgatcgcctt
gttaaaatttgggcgatggaaacaacattctgtctggctagctgccggggtcatgaaggt
gatattactgatcttgcagtgagttccaataatgctgtggtagcatcttcatctaatgat
tttgttattagggtgtggcgtatgcctgatggaatgccaatcgcagtgctcaaggggcat
acaggtgcagttactgctattgcatttagtccaaggccaggtgctgccttccagctgttg
tcatcatcagatgatgggacatgcaggatttgggatgctagatactctcaagaaccccta
cgaatatatataccaaaacctccagatgctgcccctgggaagagtggtgatgcatcttct
agcgctgctcaagttcagcaaacaaatcaccaaatcttatgttgcgcattcaatgctaat
ggaactgtgtttgtcactggcagctcagacacatttgcaagggtgtggaatgcttgcaag
agttcttctgaggaacatgaccaaccgaatcatgagatggatctattatctgggcatgaa
aatgatgtaaactatgtgcagtttagtggatgtgctgtggcttctagatctttttcgtct
gattccagtcataccactaaggaagaaagtagccttaagctaagaaattcctggttcaca
cataatattgttacctgctctcgtgatggcagtgcaattatatgggttccgcgatctcgg
aggtcacatggaaaggttggacgctggacacgtgcttaccatcttaaagttcctccgcct
ccaatggctcctcaaccgcctcgaggcggtcctcgtcaaagatatcaaccaactcctcgt
ggtgtcaatatgattgtttggagtctggacaaccgtttcgtgcttgctgctatcatggac
tgcagaatttgtgtatggaatgcttctgatggtagcttggtgcattcattgattggccat
aaggaatcgacatttgttcttgatgtccatccattcaaccctcgtatcgctatgagtgct
gggtatgatggaatgacaatcatctgggatatatgggaaggaaaacctgtacagatatat
gaaactgggcattttaagctagttgatgggaagttctctccggatggtacatcacttatt
ctaaccgacgaaattgggcaaatattcattattggtacggggcaaggagagtcccagaag
gacgcgaaatatgatcagttcttccttggagactatcggccccttatccgagatacaact
ggaaatgttattgatcaggaaacacagcttataccgtataggagaaatatgcaagacctt
ttgtgtgattctagtatgataccatatccagagccctttcagagtatgtaccagaaacgc
cggttaggtacccttggtattgagtggcgacctccctctgtgaattttgctgttggcccc
acttacaatgcaaccactggagaataccaaaccatcccaattattgatccggataggtgg
gaaccacttctagagataacagacttcgttgagcttgaaccagaaaacgaagttatctct
gatgatactgattctgagtacaatggcatggatgagtattctagtgaaggagaacaggag
attttgagtgttgattcctcaggtgcttcatactcgattgcagagattgatgctgatgat
cctactagtgctgctcatctccgcagatcgagaagaaagaagaaaaaatctgatcctgac
cttgttacttcatctggtcggcgagttaagaaaataaatttggatgagcatgatgttgct
acagtttcaaggccacatagatgtaggaagtctaggaatggtcgatctagcaaaaggaaa
agatcccctaaatctaggggattgcgaccgcaaagacgtgctgctcgcaatgcacgcaat
tttttgtcaaagatgggagcttcaacagaagaggatgaagatgactcagagggcagtttc
tcagacagtgaattgaacacggatagcactgaagctgaacagttagaatggaacggccag
ctaagaattggcagagagattaactgccattatgactccgaagatgttacacaaccttct
tggttcactgaaactaagggaaattctggaactaatagaaaattagtcctcaggatacca
cgacgtgatttaaaaattgaatttccttcgggaagtggaaaagcagaacgctccgctcag
gataaagcagtgatgtcacttgctccagctaatcatgaatcagttgagccagaactaact
atcgagcctggacattcctctgcttgcaaggctgaatttacgacagatggagtgcaaact
gagacctctgatctgcaagatgtttgtgctattcacagtaacaactcaatcaaatggggt
gaggttaagatgcgatcatcaaagcgttgcaagttcagtgattcagcaggaggcatgtgg
tccacttcaaataatgctgtttcacaggatgttgatgagtcaggtagtcaggagatgcgt
catgaatacagtgatgacatccagggacgtgttgagcagaatgtacaagaaatccaactc
gcaataaatctggataaaattcaggaaaaccacagtattgatgagtacagcgtagataat
ttgccagataaagaaaagataactaacaacaataatactcgtgcagatggagagaataac
atggaacaagtccgcaatacttctcagtctaaatccttgaaactgaagttcaggtcaaga
ggctctgcagatggagcaaatttatcagacaaatcaagaactactgcagtagaaaatatc
acaaactctgagcatgttaaagattctgtgcagcatgatgaggattctgccaatcaacat
aggagtgctgatttcctcaatgtgtccagaagctttccagaatgtacagataaaagcact
ggtttgcatgattcaaaaaaattggattctgcaaagtcatacactgcagtgtacaagagg
tcaaagccaaataacaggaaaaaattggattcagatgaatatacaaacgaggatagcact
tctatttccaacgatggtggtgggtaccaacctccagaacatagtcctgttacagctgct
agcggtagattgcgaagaagtgcaaggaggtcatatgcatactccggtgatggtacgaca
ggggatgatacttctcaagtgaaagattcttattgttcccatgaagcatcaactagtgga
agacgaattgtcacagatgtgcgtgaagtaatgtggagatcaacctcaaaaactgttggt
ttaaggtctgctaggaacaaaagagatagttgcaactttcctgatacatatctatcgggg
aaaaggcaccaggtatccgtaaagtattcgtggttgatgttgcgtgagcatgaagatagc
taccgttatattcctcaacttggcgacgaggttctgtacttgggacagggtcatgaagaa
tatcttgaagtagggcgttcaccagattactgcccatggaatcggatcaaaggccttaaa
gctgtagaactttgcaaaattcagggtcttgattacactactttcagaggatctggtgaa
agctgctgtaaattaactgttgaatttgttgatggcacttctagtggatttggtagaaaa
tttgttatcaccttgcctgagctagttaacttcccagattttcttgtggaaaaaacaagg
tatgacgctgctattgagcggaattggacccacagagataagtgcaaagtttggtggagg
gatgagggagtggaagggggaacttggtgggagggacgggtgttgtcagtgaaacctaaa
tcacctgattttccggagagtccatgggagaaatatgtcatccagtataagaatgatggt
tcagatcacccgcatagcccctgggaacttcatgatgttggcaatttatgggctccatgg
aaacatccacatattgatctcaggattagaaataaattgctatcgcaagtgcaaaatttg
caggaaatgtctcatagaaatcaggatcgttatggtgttttaaagttggataaggttgca
gaaaagtccgatttcgtaaacaggtttcctgtccaattttcgattgaggtgatcaagaca
agactagataataattactacagaactctggaggctgtccgacatgatgccactgtggtg
actgcaaatgcccagtcttacttttcaaagagcactgaaatgaccaaaaagattcgcaag
ctcgctgagtggatcgaacaaaccttttcgtcactgtag
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integrated database retrieval system
