KEGG   Phragmites australis (common reed): 133916256
Entry
133916256         CDS       T10575                                 
Name
(RefSeq) uncharacterized protein LOC133916256 isoform X1
  KO
K11797  PH-interacting protein
Organism
paua  Phragmites australis (common reed)
Brite
KEGG Orthology (KO) [BR:paua00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:paua04121]
    133916256
Ubiquitin system [BR:paua04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     133916256
SSDB
Motif
Pfam: BRWD_AD Beta-prop_THOC3 Beta-prop_WDR5 WD40 Beta-prop_IFT122_1st Beta-prop_WDR3_1st WD40_Prp19 BRWD1_N WD40_WDHD1_1st WD40_CDC20-Fz WD40_Gbeta Beta-prop_TEP1_2nd Beta-prop_WDR3_2nd EIF3I Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 Beta-prop_WDR75_1st Beta-prop_WDR36-Utp21_2nd Beta-prop_EML DSE1_N Beta-prop_SCAP WDR55 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd CFAP251_N NBCH_WD40 Beta-prop_WDR41 Bromodomain WD40_MABP1-WDR62_1st Beta-prop_Aladin Beta-prop_WDR36-Utp21_1st Beta-prop_DCAF4 Beta-prop_EIPR1 Beta-prop_WDR35_TULP_N PAC11 Beta-prop_HPS5 WDR90_beta-prop_4th
Other DBs
NCBI-GeneID: 133916256
NCBI-ProteinID: XP_062215844
LinkDB
Position
4:35874761..35890946
AA seq 1712 aa
MSPNFLYPGGVVGMSFGKHPSGNAASISMAPLDFPSQGQELEKVNPVNSVMSADVASMAD
VHIDMREIYFLIMHFLSLGPFKRTFGEMCNELLEHQLLPRRYHAWYSRGGFYSGEENDDG
ISVPLGYLKLVERYPHIGKDHLVKLLKQLMATSCHPHSLVGGGSPNAADVPTLLGSNSFS
LLASDRGRQDKETPRLPSYLRWPHIQTDQVHGLSLREIGGFTKHCRAPSVRASCYAIAKP
STLVEKMQIIKRLRGHQNAVYCATFDRVGRYVITGSDDRLVKIWAMETTFCLASCRGHEG
DITDLAVSSNNAVVASSSNDFVIRVWRMPDGMPIAVLKGHTGAVTAIAFSPRPGAAFQLL
SSSDDGTCRIWDARYSQEPLRIYIPKPPDAAPGKSGDASSSAAQVQQTNHQILCCAFNAN
GTVFVTGSSDTFARVWNACKSSSEEHDQPNHEMDLLSGHENDVNYVQFSGCAVASRSFSS
DSSHTTKEESSLKLRNSWFTHNIVTCSRDGSAIIWVPRSRRSHGKVGRWTRAYHLKVPPP
PMAPQPPRGGPRQRYQPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNASDGSLVHSLIGH
KESTFVLDVHPFNPRIAMSAGYDGMTIIWDIWEGKPVQIYETGHFKLVDGKFSPDGTSLI
LTDEIGQIFIIGTGQGESQKDAKYDQFFLGDYRPLIRDTTGNVIDQETQLIPYRRNMQDL
LCDSSMIPYPEPFQSMYQKRRLGTLGIEWRPPSVNFAVGPTYNATTGEYQTIPIIDPDRW
EPLLEITDFVELEPENEVISDDTDSEYNGMDEYSSEGEQEILSVDSSGASYSIAEIDADD
PTSAAHLRRSRRKKKKSDPDLVTSSGRRVKKINLDEHDVATVSRPHRCRKSRNGRSSKRK
RSPKSRGLRPQRRAARNARNFLSKMGASTEEDEDDSEGSFSDSELNTDSTEAEQLEWNGQ
LRIGREINCHYDSEDVTQPSWFTETKGNSGTNRKLVLRIPRRDLKIEFPSGSGKAERSAQ
DKAVMSLAPANHESVEPELTIEPGHSSACKAEFTTDGVQTETSDLQDVCAIHSNNSIKWG
EVKMRSSKRCKFSDSAGGMWSTSNNAVSQDVDESGSQEMRHEYSDDIQGRVEQNVQEIQL
AINLDKIQENHSIDEYSVDNLPDKEKITNNNNTRADGENNMEQVRNTSQSKSLKLKFRSR
GSADGANLSDKSRTTAVENITNSEHVKDSVQHDEDSANQHRSADFLNVSRSFPECTDKST
GLHDSKKLDSAKSYTAVYKRSKPNNRKKLDSDEYTNEDSTSISNDGGGYQPPEHSPVTAA
SGRLRRSARRSYAYSGDGTTGDDTSQVKDSYCSHEASTSGRRIVTDVREVMWRSTSKTVG
LRSARNKRDSCNFPDTYLSGKRHQVSVKYSWLMLREHEDSYRYIPQLGDEVLYLGQGHEE
YLEVGRSPDYCPWNRIKGLKAVELCKIQGLDYTTFRGSGESCCKLTVEFVDGTSSGFGRK
FVITLPELVNFPDFLVEKTRYDAAIERNWTHRDKCKVWWRDEGVEGGTWWEGRVLSVKPK
SPDFPESPWEKYVIQYKNDGSDHPHSPWELHDVGNLWAPWKHPHIDLRIRNKLLSQVQNL
QEMSHRNQDRYGVLKLDKVAEKSDFVNRFPVQFSIEVIKTRLDNNYYRTLEAVRHDATVV
TANAQSYFSKSTEMTKKIRKLAEWIEQTFSSL
NT seq 5139 nt   +upstreamnt  +downstreamnt
atgtctcctaactttttatatccaggcggtgtagtcggcatgtcttttggaaagcaccct
tctggtaatgcggcctccattagtatggcacccttggatttcccaagtcagggtcaggaa
cttgagaaggttaatcctgtgaattcagtgatgtcagctgatgttgcatccatggctgat
gttcatattgatatgagagaaatttactttctcattatgcattttttatctcttggtcca
tttaaacgaacctttggagaaatgtgcaatgaactcctggagcatcaactgctacctaga
agataccatgcttggtattcacgtggtggtttctatagtggtgaagaaaatgatgatggc
atatcagtccctttaggttacctaaagttagtcgagaggtacccccacattggtaaagac
cacttggtaaagcttttaaaacaactgatggctacttcctgccacccgcacagcttggtt
ggaggaggttctccaaatgctgctgatgtcccaacacttcttggctccaactccttttca
cttcttgcatctgataggggcaggcaagataaggaaactcccaggctgccgagttatctc
cgttggccgcacatacagactgatcaagttcatggcctaagtttgagagagattggtggt
tttactaagcattgtcgagctccgtctgtacgtgcatcgtgctatgccatcgcgaagcca
tctacccttgttgaaaagatgcaaattataaagagattgaggggacatcaaaatgctgtg
tattgtgctacttttgatcgtgtggggcgttatgttattactggttctgatgatcgcctt
gttaaaatttgggcgatggaaacaacattctgtctggctagctgccggggtcatgaaggt
gatattactgatcttgcagtgagttccaataatgctgtggtagcatcttcatctaatgat
tttgttattagggtgtggcgtatgcctgatggaatgccaatcgcagtgctcaaggggcat
acaggtgcagttactgctattgcatttagtccaaggccaggtgctgccttccagctgttg
tcatcatcagatgatgggacatgcaggatttgggatgctagatactctcaagaaccccta
cgaatatatataccaaaacctccagatgctgcccctgggaagagtggtgatgcatcttct
agcgctgctcaagttcagcaaacaaatcaccaaatcttatgttgcgcattcaatgctaat
ggaactgtgtttgtcactggcagctcagacacatttgcaagggtgtggaatgcttgcaag
agttcttctgaggaacatgaccaaccgaatcatgagatggatctattatctgggcatgaa
aatgatgtaaactatgtgcagtttagtggatgtgctgtggcttctagatctttttcgtct
gattccagtcataccactaaggaagaaagtagccttaagctaagaaattcctggttcaca
cataatattgttacctgctctcgtgatggcagtgcaattatatgggttccgcgatctcgg
aggtcacatggaaaggttggacgctggacacgtgcttaccatcttaaagttcctccgcct
ccaatggctcctcaaccgcctcgaggcggtcctcgtcaaagatatcaaccaactcctcgt
ggtgtcaatatgattgtttggagtctggacaaccgtttcgtgcttgctgctatcatggac
tgcagaatttgtgtatggaatgcttctgatggtagcttggtgcattcattgattggccat
aaggaatcgacatttgttcttgatgtccatccattcaaccctcgtatcgctatgagtgct
gggtatgatggaatgacaatcatctgggatatatgggaaggaaaacctgtacagatatat
gaaactgggcattttaagctagttgatgggaagttctctccggatggtacatcacttatt
ctaaccgacgaaattgggcaaatattcattattggtacggggcaaggagagtcccagaag
gacgcgaaatatgatcagttcttccttggagactatcggccccttatccgagatacaact
ggaaatgttattgatcaggaaacacagcttataccgtataggagaaatatgcaagacctt
ttgtgtgattctagtatgataccatatccagagccctttcagagtatgtaccagaaacgc
cggttaggtacccttggtattgagtggcgacctccctctgtgaattttgctgttggcccc
acttacaatgcaaccactggagaataccaaaccatcccaattattgatccggataggtgg
gaaccacttctagagataacagacttcgttgagcttgaaccagaaaacgaagttatctct
gatgatactgattctgagtacaatggcatggatgagtattctagtgaaggagaacaggag
attttgagtgttgattcctcaggtgcttcatactcgattgcagagattgatgctgatgat
cctactagtgctgctcatctccgcagatcgagaagaaagaagaaaaaatctgatcctgac
cttgttacttcatctggtcggcgagttaagaaaataaatttggatgagcatgatgttgct
acagtttcaaggccacatagatgtaggaagtctaggaatggtcgatctagcaaaaggaaa
agatcccctaaatctaggggattgcgaccgcaaagacgtgctgctcgcaatgcacgcaat
tttttgtcaaagatgggagcttcaacagaagaggatgaagatgactcagagggcagtttc
tcagacagtgaattgaacacggatagcactgaagctgaacagttagaatggaacggccag
ctaagaattggcagagagattaactgccattatgactccgaagatgttacacaaccttct
tggttcactgaaactaagggaaattctggaactaatagaaaattagtcctcaggatacca
cgacgtgatttaaaaattgaatttccttcgggaagtggaaaagcagaacgctccgctcag
gataaagcagtgatgtcacttgctccagctaatcatgaatcagttgagccagaactaact
atcgagcctggacattcctctgcttgcaaggctgaatttacgacagatggagtgcaaact
gagacctctgatctgcaagatgtttgtgctattcacagtaacaactcaatcaaatggggt
gaggttaagatgcgatcatcaaagcgttgcaagttcagtgattcagcaggaggcatgtgg
tccacttcaaataatgctgtttcacaggatgttgatgagtcaggtagtcaggagatgcgt
catgaatacagtgatgacatccagggacgtgttgagcagaatgtacaagaaatccaactc
gcaataaatctggataaaattcaggaaaaccacagtattgatgagtacagcgtagataat
ttgccagataaagaaaagataactaacaacaataatactcgtgcagatggagagaataac
atggaacaagtccgcaatacttctcagtctaaatccttgaaactgaagttcaggtcaaga
ggctctgcagatggagcaaatttatcagacaaatcaagaactactgcagtagaaaatatc
acaaactctgagcatgttaaagattctgtgcagcatgatgaggattctgccaatcaacat
aggagtgctgatttcctcaatgtgtccagaagctttccagaatgtacagataaaagcact
ggtttgcatgattcaaaaaaattggattctgcaaagtcatacactgcagtgtacaagagg
tcaaagccaaataacaggaaaaaattggattcagatgaatatacaaacgaggatagcact
tctatttccaacgatggtggtgggtaccaacctccagaacatagtcctgttacagctgct
agcggtagattgcgaagaagtgcaaggaggtcatatgcatactccggtgatggtacgaca
ggggatgatacttctcaagtgaaagattcttattgttcccatgaagcatcaactagtgga
agacgaattgtcacagatgtgcgtgaagtaatgtggagatcaacctcaaaaactgttggt
ttaaggtctgctaggaacaaaagagatagttgcaactttcctgatacatatctatcgggg
aaaaggcaccaggtatccgtaaagtattcgtggttgatgttgcgtgagcatgaagatagc
taccgttatattcctcaacttggcgacgaggttctgtacttgggacagggtcatgaagaa
tatcttgaagtagggcgttcaccagattactgcccatggaatcggatcaaaggccttaaa
gctgtagaactttgcaaaattcagggtcttgattacactactttcagaggatctggtgaa
agctgctgtaaattaactgttgaatttgttgatggcacttctagtggatttggtagaaaa
tttgttatcaccttgcctgagctagttaacttcccagattttcttgtggaaaaaacaagg
tatgacgctgctattgagcggaattggacccacagagataagtgcaaagtttggtggagg
gatgagggagtggaagggggaacttggtgggagggacgggtgttgtcagtgaaacctaaa
tcacctgattttccggagagtccatgggagaaatatgtcatccagtataagaatgatggt
tcagatcacccgcatagcccctgggaacttcatgatgttggcaatttatgggctccatgg
aaacatccacatattgatctcaggattagaaataaattgctatcgcaagtgcaaaatttg
caggaaatgtctcatagaaatcaggatcgttatggtgttttaaagttggataaggttgca
gaaaagtccgatttcgtaaacaggtttcctgtccaattttcgattgaggtgatcaagaca
agactagataataattactacagaactctggaggctgtccgacatgatgccactgtggtg
actgcaaatgcccagtcttacttttcaaagagcactgaaatgaccaaaaagattcgcaag
ctcgctgagtggatcgaacaaaccttttcgtcactgtag

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