KEGG   Phragmites australis (common reed): 133916392
Entry
133916392         CDS       T10575                                 
Name
(RefSeq) THO complex subunit 4A-like
  KO
K12881  THO complex subunit 4
Organism
paua  Phragmites australis (common reed)
Pathway
paua03013  Nucleocytoplasmic transport
paua03015  mRNA surveillance pathway
paua03040  Spliceosome
Brite
Messenger RNA biogenesis [BR:paua03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     133916392
    TREX complex
     133916392
Spliceosome [BR:paua03041]
 Complex C
  Other components
   EJC/TREX
    133916392
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    133916392
SSDB
Motif
Pfam: RRM_1 FoP_duplication RRM_3 Adeno_L433K_22K Kdo_hydroxy
Other DBs
NCBI-GeneID: 133916392
NCBI-ProteinID: XP_062216025
LinkDB
Position
4:38275343..38277987
AA seq 256 aa
MAETLDMTLDDIIKSNKKSNSSSGGGGRRRGGSTSGGGGGGGGVGPTRRPFKRSGNRPAP
YQPPKAPDAAWQHDMYPAVAAGGGGGSGGRVSAIETGTKLYISNLDFGVSNEDIKELFSE
LGDLKRSSINYDRSGRSKGTAEVVFARRADAVAAFKKYNNVQLDGKPMKIEIVGTNTPTA
AASLPVTNGGQARNAARSAPRVAPPGLPHRRPHQRGGRRGGGGSGGRRGKERGQPKSAEE
LDAELEKYHAESMQTN
NT seq 771 nt   +upstreamnt  +downstreamnt
atggcggagaccctcgacatgaccctcgacgacatcatcaagagcaacaagaagagcaac
tcctcatccggtgggggtggccgccgccggggcggttctacctctggaggaggcggcggc
ggcggcggggtcgggccgacaaggcgccccttcaagaggtccgggaacaggccggcgcca
taccagccgccgaaggcccctgacgcggcgtggcagcacgacatgtaccccgcggtagcc
gcgggaggaggcggtggcagtggcgggagggtctcggctatcgagacgggcaccaagctc
tacatctccaacctggactttggcgtctcaaacgaggacatcaaggagcttttctctgag
ctaggtgatctgaagcgatcctcaattaactatgaccgaagtgggaggtctaagggaaca
gctgaagttgtatttgcaaggcgtgctgatgctgtagcagcatttaagaaatataacaat
gtgcaacttgatgggaagcctatgaaaatagagatagttgggaccaatactccaacagca
gctgcttctcttccagtcactaatggaggccaggctaggaatgctgctagaagcgcacca
agggttgcccctccaggtctgccgcatcgtagaccccatcagaggggtgggaggcgtggt
ggtggtggatccggtggtcgtcgtggcaaagagcgtggccagccaaagtctgctgaagaa
cttgatgctgagttggagaagtaccatgccgaatcgatgcagacaaactag

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