Phragmites australis (common reed): 133916406
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Entry
133916406 CDS
T10575
Name
(RefSeq) protein spotted leaf 11-like
KO
K27628
U-box domain-containing protein 12/13/14 [EC:
2.3.2.27
]
Organism
paua Phragmites australis (common reed)
Pathway
paua04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
133916406
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
paua04121
]
133916406
Enzymes [BR:
paua01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
133916406
Ubiquitin system [BR:
paua04121
]
Ubiquitin ligases (E3)
U-box type E3
133916406
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Arm
ARM_ARMC5
U-box
KAP
Neurochondrin
Arm_2
HEAT_2
MLKL_N
Adaptin_N
zf-Nse
SRA1
zf-C3HC4_4
Motif
Other DBs
NCBI-GeneID:
133916406
NCBI-ProteinID:
XP_062216040
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Position
4:complement(38525016..38530689)
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AA seq
781 aa
AA seq
DB search
MTLTAGTCGPAWQSEAILGEAGRRSPSLARLLQIPFPAPSHRSQPPAAVLRAGQGPSLSL
SSVAMDEEAKAGSNTDANTNAAAAAAAKSAAAPPLASGSESTEREAKEEVVGEEGAVVER
LVELVDEIAAISGFRNAYRRQFCNLSRRIRLLAPMLEEAKETPRPLPVASEASLRQLREA
LDFAGELLRLGSSGSKIFLVLEREKIMKTFQDITARLEQALAGISFDELNISDEVREQVE
LVHAQFKRAKERSDTSDDDIFNDLMSVYSSTSGANIDPDILRRLSEKLQLVTISDLNQES
LTLHEMASGGDPGAVVEKMLMLLKKIKDFKQTEDPEIGAPASTTDISSKDNSTCPVIPND
FRCPISLDLMKDPVIVATGQTYERGYIERWLEAGHDTCPKTQQKLPNKSLTPNYVLRSLI
TQWCEANGMESPKCSAQLSNAPVSCTAAEHSNVVELLQKLSSQNLEDQRGAAGVLRQLAK
RSAENRACIGNAGAIPILVSLLSTTDVSTQEHVVTALLNLSIYEENKARIVTSGAVPGIV
HVLKRGSMEARENSAATLFSLSIVDENKVTIGASGAIPALVQLLSNGSQRGKKDAATALF
NLCIYQGNKGKTVRAGLVPILLELLMETESGMVDEALAILAILSGHPEGKAAIGAASAIP
VLVRVIRNGSARNKENAVAVMVHLCNGEQQQQHLAEAQEQGIVFLLEDLAESGTDRGKRK
AIQLLERMNRFLKQQSQAQAQAQAEALAQAQRQAQVVQAQAQADMQVEQSLLPTSSHIPD
R
NT seq
2346 nt
NT seq
+upstream
nt +downstream
nt
atgacgctgaccgctgggacctgtggccccgcatggcagagcgaagctatactaggcgag
gcaggacgcaggagccccagcctcgctcgcctactccaaatccccttccccgcacccagc
caccgctcccagcctccggccgccgtgctgcgcgcaggacaaggcccgagcctgagcctc
agttctgtcgccatggacgaggaagcgaaggcgggttctaacactgacgccaacaccaac
gccgccgccgccgccgcagccaagtcggcagccgctccaccgctggcctcgggttcggag
tcgactgaaagggaggcgaaggaggaggtggtgggggaggagggagcggtggtggagagg
ttggtggagctggtggacgagatcgcggccatctcaggcttcaggaacgcgtaccggagg
cagttctgcaacctgtcgcggcggatccggctgctcgcgcccatgctggaggaggccaag
gagacgccgaggccgctgccggtggcgtcggaggcctcgctccggcagctcagagaagca
ctcgacttcgctggggagctgctacggctcggcagcagcggcagcaagatcttcctggtt
cttgagagagagaaaataatgaagactttccaagacattacagcaaggcttgaacaagcc
ttagctggtatctcgtttgatgagcttaacatatcagatgaagtaagagagcaggttgaa
ttggtgcatgctcagttcaaaagagctaaggaacgatcggatacatctgatgatgatatt
tttaatgatctgatgtctgtctacagttcaaccagcggtgctaatatagatccggatatt
cttcgaaggttatctgagaagttgcagcttgtcacaatatctgacctcaatcaagaatct
ctgaccttgcatgagatggctagtggtggtgatcctggtgcagttgttgagaagatgttg
atgctcctgaaaaagatcaaggattttaagcagactgaagaccctgaaataggcgctcca
gcaagtacaacagacatctcctcaaaagacaactcaacatgtcctgttattcctaatgat
ttccgttgcccaatatcactggatttaatgaaagacccagttattgtcgccactggacag
acttacgagcgagggtacatagagaggtggctggaggctggccatgacacctgcccgaag
acacagcagaagcttcccaataaatccctgactccaaactatgtcctacgcagcctcata
actcaatggtgcgaggcgaatggtatggagtcgccaaaatgctctgctcaacttagtaat
gcaccagtgtcatgtactgctgctgagcatagcaatgtcgttgagcttcttcagaagctg
tcgtcccaaaaccttgaagatcaacgtggtgctgctggtgtgcttcgtcagcttgccaag
cgcagtgctgaaaatcgtgcttgtattggaaatgctggtgctattcctattcttgtgagc
ctgctatcaacaacagatgttagcacccaggaacatgtggttactgctctcttgaatctt
tccatttatgaagagaacaaggcaagaatagtcacctccggagctgttcctggaattgtg
catgtgttaaagagaggcagcatggaggctcgggagaattcagctgcaacactgttcagc
ctttctattgtagatgagaacaaggtgactattggggcttccggggcaattccagctctt
gtacagctattgagtaatggaagtcaacggggtaaaaaggatgcggcaacagcactattt
aatttgtgtatttatcagggcaacaagggtaaaactgttagagctggattggtccctata
ctactagaactactcatggagactgagagtggaatggtagatgaggcccttgcaatattg
gcaatcctctctggccatcctgaaggcaaggcagctatcggtgctgcttctgcaatacct
gttcttgttagagttatcagaaatggatctgcaaggaacaaagaaaatgcagttgctgtt
atggtgcatctctgcaatggcgaacagcagcaacagcatcttgctgaagcgcaggagcag
ggtattgtgtttttgctggaggatctagcagaaagtggcacagacagaggaaagaggaaa
gcaatccagctgctcgaaaggatgaatcggttcctaaagcagcagagtcaagcccaagcc
caagctcaagcagaggccctggcacaggcacaaaggcaggctcaggtggttcaagcccaa
gcgcaagcagacatgcaagtagagcaatcactgcttcccacttcatcacatattcctgat
agatga
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