Phragmites australis (common reed): 133916421
Help
Entry
133916421 CDS
T10575
Name
(RefSeq) E3 ubiquitin-protein ligase RDUF2-like
KO
K11982
E3 ubiquitin-protein ligase RNF115/126 [EC:
2.3.2.27
]
Organism
paua Phragmites australis (common reed)
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
paua04131
]
133916421
04121 Ubiquitin system [BR:
paua04121
]
133916421
Enzymes [BR:
paua01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
133916421
Membrane trafficking [BR:
paua04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Rab associated proteins
133916421
Ubiquitin system [BR:
paua04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
133916421
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF1117
zf-RING_2
Zn_ribbon_19
zf-C3HC4_2
zf-RING_11
zf-C3HC4
zf-rbx1
zf-RING_UBOX
zf-ANAPC11
zf-RING_5
zf-C3HC4_3
Prok-RING_1
zf-RING_16
HypA
zf-RING_Vps41
zf_RING_Vps8_fungal
zf-WRNIP1_ubi
Motif
Other DBs
NCBI-GeneID:
133916421
NCBI-ProteinID:
XP_062216067
LinkDB
All DBs
Position
4:complement(38960720..38964288)
Genome browser
AA seq
280 aa
AA seq
DB search
MESYPVSYWCYRCSRFVRVSPATVVCPECDGGFLEQFPQPPPRGGGGSGRRGSMNPVIVL
RGGSLAGFELYYDDGAGDGLRPLPGDVSHLLMGSGFHRLLDQFSRLDAAAPRPPASKAAV
ESMPSVTVAGGGAHCAVCQEAFEPGAAGREMPCKHVYHQDCILPWLSLRNSCPICRQELP
AAATPDVEAADAGLTIWRLPRGGFAVGRFAGGPREQLPVVYTELDGGFSNGVRPRRVTWP
EGDGQVGGGGEGRIRRVFRNLFGCFGQGRRQASSSQSSSG
NT seq
843 nt
NT seq
+upstream
nt +downstream
nt
atggagtcgtatccggtgtcgtactggtgctaccgctgcagccgcttcgtgagggtgtct
ccggccaccgtcgtctgccccgagtgcgacggcggcttcctggagcagttcccgcagccg
ccgccacggggcggcggtgggagcggccggcgtgggtcgatgaacccggtcatcgttctc
cggggcggatcgttggccgggttcgagctctactacgatgatggcgcgggcgacgggctg
cggccactacctggcgacgtatcgcacctccttatggggtccgggttccaccgccttctc
gaccagttctcgcgcctggatgcggcggcgccgcggccgccggcgtcgaaggctgcggtg
gagtccatgccgtcggtgacggtcgccggaggcggggcccactgtgccgtgtgccaggag
gcctttgagcccggcgccgccgggcgggagatgccgtgcaagcacgtctaccaccaggac
tgcatcctaccctggctctccctccgcaactcctgccccatctgccgccaagagcttccg
gccgctgccaccccagatgtggaggcggcggatgcggggctcaccatctggcgacttcca
cgcggtggatttgccgtcgggaggtttgccggcgggcccagagagcagctcccagttgtc
tacactgagctggatgggggcttcagtaacggggtcaggccaaggcgggtgacatggcca
gagggagatgggcaagtgggtggcggcggcgaaggtcggattcgccgtgtttttaggaat
ctatttggctgttttggtcagggcaggcggcaagcgagctcgtctcaatccagtagtggc
tga
DBGET
integrated database retrieval system
