Phragmites australis (common reed): 133916428
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Entry
133916428 CDS
T10575
Name
(RefSeq) uncharacterized protein LOC133916428
KO
K13171
serine/arginine repetitive matrix protein 1
Organism
paua Phragmites australis (common reed)
Pathway
paua03013
Nucleocytoplasmic transport
paua03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
133916428
03015 mRNA surveillance pathway
133916428
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paua03019
]
133916428
03041 Spliceosome [BR:
paua03041
]
133916428
Messenger RNA biogenesis [BR:
paua03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
133916428
Spliceosome [BR:
paua03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR-related proteins
133916428
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PWI
Motif
Other DBs
NCBI-GeneID:
133916428
NCBI-ProteinID:
XP_062216078
LinkDB
All DBs
Position
4:39048076..39056483
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AA seq
861 aa
AA seq
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MSGGFFRGTSADQDTRFSNKQAKLLKTQKFAPELDHLVDMTKVKMDVMKPWIATRATELL
GFEDEVLINFIYGLLEEKEVDGKKIQIQLTGFMEKNTLKFMKELWSLLLSAQQNASGVPQ
QFLDAKEAEIQQRKAEDDIIVQEIQKKREKDGRDSELEKHKMMDGDAGNSRFYCDSFGSA
LNNTNANAEGENELDFKRNSRTKSREGHRSRSISLSPHGRQRSISPRRRSRSPYRRSRSI
DRHHRSSRRSTSSRRSVSPRRHSPRSTPVSRRRSPYSRRGSPSLSGYPSPSSRRRSPHIR
RKSPSSRSWWSPSPHHRRSPAHAPRRSPSPAHRRSPIRHRCSPPRRRSPSPARHRPRSPS
PARRGPRFPSPRGRRPRSPSPARRGPRFPSPRGRRPRSPSPRGHRPRSPSPGRHRPWSRS
PVRRRSLSPKRRRRSPSSPKTRSANRCPSPQRRRSISPYSSRSPNRSRRSLSRDIEKGTN
GAPSNKDRAVLKRNQERRSDDDDRDGARMGGHLSSDSEQYRLTKSFRSPNNAERNSTHDS
SFKSSGKHFPSQDSTDTGGDEEEDSRVRENARKENSACKKTKDFSADLQLKKVHVDNSSH
GEKSPFILQKSGKGDQKKNPDRLSESSKHELAGRRMKCQTDSPDDSHGKQQSPIRIEKDN
SYLKDKRNSEHVVRGSSDDSDDAIGAKKYFSRVNEDSQSEDGSPVKKPKKRTDGNSHIYS
GSSGSEEPQKHRSHSEKRRHKKAHKHKKHHDGSSESGSEPDDKEARRRKEEKRLRKEERR
QRREEWHRKRAERHASKQKAKHIDTVTPPSDFEKDRGSDSDADVGKRGSHAGREESDQKK
LEIELREKALESLRAKKAISH
NT seq
2586 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggcggcttcttccgggggacgtccgccgaccaagacacgcgcttctccaacaag
caggccaagttgctcaagactcagaagttcgcgcccgagcttgatcacctagttgacatg
acgaaggtcaagatggatgtgatgaagccctggatcgccacgcgggccactgagctgctc
gggttcgaggacgaggtgctcatcaacttcatctacggcctcctcgaagagaaggaggtg
gatgggaagaagattcagatccagctgacaggattcatggagaagaacacattgaagttc
atgaaggagctctggagcctcctcctgagcgcacagcagaatgccagtggggtgcctcaa
cagtttctagatgcaaaggaggctgagatacagcagagaaaggcggaggatgatataatt
gtgcaggagatccaaaagaagcgggagaaagatggaagggactcagaactggagaaacac
aagatgatggatggggatgctggtaactcaagattctattgtgattcatttggctctgct
ttaaataataccaatgccaatgctgagggtgaaaatgaattggactttaagcgcaactca
agaacaaagagccgggaaggtcacagatccagaagcatatctttgtcaccccatggtagg
caaagatctatttctcccagaaggcgttctcgatctccttacaggcgttcccgctctatt
gataggcaccatagatcatcacggcgttcaacttcatctagacgttctgtttctccccga
aggcattctccaagaagtactccagtttctagaaggaggtcaccttattccaggagaggg
tcaccttcattgtcaggatatccatccccatcttctcgtcggcgatctcctcacattcgc
agaaaatcgccatcgtctaggtcgtggtggtcaccttctccccaccatcgtcgttctcca
gctcatgcaccaaggagatcaccatctcctgcacatcgaagatcccctattcgacacaga
tgttcaccacctagacgccgatctccatctccagcaaggcataggccaagatccccatct
ccagcaagacgcgggccaagattcccatctccaagaggccgcaggccaagatccccatct
ccagcaagacgcgggccaagattcccatctccaagaggccgcaggccaagatccccatct
ccaagaggccacaggccacggtccccatctcctggaagacacagaccatggtctcggtct
ccagtaagacgtcggtccctgtcaccaaaacgccggaggagatccccaagttcaccgaaa
actcgttctgcaaatcgatgtccgtctccacagcgaaggaggagtatcagtccatacagt
agcaggagtcctaatcgttctcgcaggagtttgagtagagacatcgagaaaggaacgaat
ggcgccccctccaataaagacagagctgtgcttaaaaggaaccaagaaagaagatcagat
gatgatgacagggatggtgcaaggatgggtggccatctttcctcagattctgagcaatat
aggttgacaaaatcctttaggtctcctaacaatgcagaaaggaactccactcatgatagc
tctttcaagagctctgggaaacattttcctagtcaggacagcacagatacaggtggagat
gaggaggaagacagtcgtgttagagagaatgcacggaaagaaaattcagcatgtaagaaa
actaaggatttctcggctgatctgcaacttaagaaagtccatgttgataactcaagccat
ggagaaaaatctccattcatattgcaaaagagtggcaagggcgatcagaagaaaaaccct
gaccgactatcagaatcgtcaaaacatgagcttgctggtagaagaatgaagtgtcaaact
gattctcctgatgattctcatgggaaacagcagtcccctattagaattgaaaaggataac
tcttatttgaaggacaagaggaacagtgagcatgtcgtgaggggttcgagtgatgattct
gatgatgctattggggcaaagaaatatttttctagagtcaacgaggattcccaatcagaa
gatggaagtcctgttaaaaagcccaagaaaagaacagatggtaatagtcacatttattct
ggtagttcaggctctgaagaacctcagaaacatagatcccactctgagaagcgaaggcat
aagaaggctcataagcacaagaaacatcatgatggtagttctgagtctggttccgagcca
gatgacaaagaggcaaggaggaggaaagaagaaaagaggctaagaaaagaggaaaggcgc
caaagacgtgaagaatggcaccgcaaaagggcagaacgccatgccagcaaacaaaaagcg
aagcacattgatactgttacaccaccttcagattttgagaaggatcggggttctgattca
gacgctgatgttgggaaaagaggttcacatgctggcagagaagagtctgatcagaagaaa
cttgaaattgagcttcgtgagaaggcccttgaatctcttagagcaaagaaagccatcagc
cactag
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