Phragmites australis (common reed): 133916728
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Entry
133916728 CDS
T10575
Name
(RefSeq) plant-specific TFIIB-related protein 1-like
KO
K03124
transcription initiation factor TFIIB
Organism
paua Phragmites australis (common reed)
Pathway
paua03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
133916728
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
paua03021
]
133916728
Transcription machinery [BR:
paua03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
133916728
Prokaryotic type
Archaeal type
TFB
133916728
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIB
Cyclin_C
TRAFD1-XIAF1_ZnF
HTH_Mga
KORA
Motif
Other DBs
NCBI-GeneID:
133916728
NCBI-ProteinID:
XP_062216519
LinkDB
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Position
4:44513808..44516744
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AA seq
535 aa
AA seq
DB search
MSSSQSQAAQCPYCRASGPARGTTTQLPHARAVSECSSCARIVLERHLHSHPVFPLLPSL
HPLPLVTPDLAAVEPSPSPDVHDDEDPFLPAGFVSAFSAFSLERHPVVARSSSAFSGLLA
ELERALVNDSSAYCALDPAGPMVSVDSLRAYLQIVDVASILKLDRDIVDHAFDLFKDCSS
ATCLRNRSVEALATAALVQAIREAQEPRTLQEISTASNLPQKEIGKYIKILGESLKLSQP
LNSNSIAVHMPRFCSLLQLNKSAQELAAHIGEVVVNKCFCTRRNPISISAAAIYLACQLE
DKRKTQAEICKVTGLTEVTLRKVYKELLENWDDLLPPGYTPATPPEKAFPMTTIYSGRSS
SGKDLYQDKILDSIKQKGPEAAEPDHMVIVKEEEDKKISALGRPPAKLEHHDSNKAFWPL
NAAFSTSSKCDRDKMEASVHGFNLNEATCAVDSDRADITLKPTVGDRLLSESKVLPSPPN
RQPTPWQLKQAAPATGSSYSRLHEQQLGLDLVAALKGIGKRSAGDGGDGSDKEGK
NT seq
1608 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcgtcgcagtcgcaggcggcgcagtgcccctactgccgcgcgtcgggcccggcg
cgcggcacaacgacgcagctgccgcacgcgcgcgccgtctccgagtgctcctcctgcgcc
cgcatcgtcctcgagcgacatctccactcgcaccccgtcttccccctcctcccctccctc
cacccgctccccctcgtcacccccgacctcgccgccgtcgagccctccccgtcccccgac
gtccacgacgacgaagaccccttcctccccgcgggtttcgtctccgccttctcggccttc
tccctcgagcgccaccccgtcgtcgcccgctcctcctccgccttctccggtctccttgcc
gagctcgagcgcgcgcttgtcaatgactcttccgcatactgcgccctggaccccgccggg
cccatggtctccgtcgacagcctccgcgcttacctccagatcgtcgacgtcgcgtccata
ctcaagctggaccgggacatagtcgaccacgccttcgatctcttcaaggactgctcgtcc
gcgacgtgcctcaggaaccggagtgtcgaggcgctcgcgaccgccgcgctcgtgcaggcc
atccgcgaggcgcaggagcccaggacgctgcaggaaatctctactgctagcaatcttcct
cagaaagagatcggaaaatacatcaaaatacttggcgaatctctgaaactgagccaaccc
cttaacagtaactcaatagctgttcatatgcctcggttttgcagcctgctccagctgaat
aaatctgctcaggaacttgcagcccatattggcgaggtagttgttaataaatgcttctgc
acgcggcggaatcccataagtatatctgctgctgctatctatcttgcatgtcagcttgaa
gacaagcgcaaaactcaggcagagatctgtaaggtaacaggccttacagaggtcactcta
cgcaaagtgtataaagagctattggagaattgggatgatttactcccacctggctataca
ccggccacaccaccagagaaagctttcccaatgaccaccatttactcggggcgctcgtca
agtggcaaggatctgtatcaggataagatattggatagtattaagcaaaaaggccctgag
gctgcagagcctgatcacatggtcatcgtaaaagaagaggaagacaagaaaattagtgca
ctcggtcgaccacctgcaaaacttgaacatcatgactcgaacaaggcattctggccactg
aatgccgcattctcaacatcttcaaaatgtgatcgtgataagatggaagctagtgttcac
gggttcaaccttaacgaggcaacttgcgcagtggattctgatagagcagatataacactg
aagccaactgtcggtgatcgattgttaagtgaatcaaaggtgctcccatctcctcccaat
aggcagcctacaccatggcagcttaagcaggcggcacctgcaactggttcatcatattct
aggcttcatgagcagcagctgggactggaccttgtggctgcactgaaggggattgggaaa
aggagtgctggggatggtggtgatggctcggataaggaagggaaatga
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