Phragmites australis (common reed): 133916851
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Entry
133916851 CDS
T10575
Name
(RefSeq) carbon catabolite repressor protein 4 homolog 1-like
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
paua Phragmites australis (common reed)
Pathway
paua03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133916851
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paua03019
]
133916851
Enzymes [BR:
paua01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
133916851
Messenger RNA biogenesis [BR:
paua03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
133916851
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
133916851
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
zf-C6H2
IG_AIR9
Motif
Other DBs
NCBI-GeneID:
133916851
NCBI-ProteinID:
XP_062216699
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Position
4:complement(46290590..46297737)
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AA seq
615 aa
AA seq
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MTQVKPAPGGRMLTVLRVHLPSEIPIVGCEITPYVLLRRPDGGILTDDVSEAAPLDGYFM
RYKWYRIQSDRRATVCSVHPTEQATLQCLGCLKSKIPTAKSYHCSAKCFSDAWQHHRVLH
ERAISSLNENGTEEEELFGSGSSGVMSAALSGSTSNLAQSSGLHNGPTPVYPTGTEKSSG
ETWFEVGCSRTYTATADDIGHVLRFECIVVDVETRGTVRAPTSVMTSRVIPAPTPTPRRL
IPVNAVDAMGHIDLDSRTSSFGTFTVLSYNILADTYATSDTYSYCPTWALSWAYRRQNLL
HEIIGYNADIICLQEVQNNHFEDFFAPELDKHGYQALYKKRTTEVYTGSPQAIDGCATFF
RRDRFSHVKKYEVEFNKAAQSLTDAIIPVAQKKLALTRLIKDNIALIAVLEAKFGNQGTE
NPSKRQLLCVANTHINIHHDLKDVKLWQVHTLLKGLEKIAVSADIPMLVCGDFNSTPGST
SHGLLAMGKVDQLHPDLAVDPLGILRPLSKLTHQLPLVSAYSSFARMIGVGYDLDHQGRR
MDPTTNEPLFTNCTRDFTGTMDYIFYTADSLTVESLLELLDEDSLRKDTALPSPEWSSDH
IALLAEFRCTPRIRR
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggtgaagcccgcccctgggggaaggatgctgaccgtgctgcgggtgcacctc
ccgtcggagatcccgatcgtgggctgcgagatcacgccgtacgtgctcctgcggcgcccc
gacggcggcatcctcaccgacgacgtgtctgaggccgcgcccttggatgggtacttcatg
cgctacaagtggtaccgcatacaaagtgatcgaagagccactgtctgcagtgtacatcca
acagaacaagcaacacttcagtgcttagggtgtctgaagtcaaaaatacctactgctaag
agctaccattgttctgctaaatgcttctctgatgcctggcaacaccaccgggttttgcat
gaacgtgctattagttctttaaatgaaaatggaactgaagaggaggagttatttggcagt
ggcagttcaggggttatgagtgctgcgttgtctggttcaacgtcaaatcttgcacagagc
tcaggtcttcataatggacctacacctgtatatccaacaggcaccgaaaagagttctggt
gaaacttggtttgaagtgggatgctcgcgaacatatacagcaactgctgacgatattggg
catgtgctaagatttgaatgcatagttgtcgatgtggaaacaagagggactgtgagagct
cctacttcagtcatgacatcccgtgtgattccagcaccaaccccaactccgcgtcgcttg
atccctgtgaatgcagttgatgcaatggggcacattgatttagatagccggacttcttct
tttgggacattcactgtactgtcctacaatattctcgctgatacatatgcaacaagtgat
acatacagctactgtccaacttgggcactttcatgggcttacagaagacaaaatttgttg
catgaaattattggttacaatgccgatattatctgccttcaggaggtacaaaataatcat
tttgaagatttttttgcaccagagcttgataaacatggatatcaagcactttataagaaa
aggacaacagaggtgtacacaggaagtcctcaagcaattgatggttgtgctacttttttc
cgaagggacagattttcacatgtcaaaaaatacgaggtcgagtttaataaggccgcacag
tctttaactgacgcaatcattcccgttgctcaaaaaaaattggctctcactcgattgatt
aaggataatattgcattaattgcagttttggaagctaaatttggtaatcaggggactgaa
aatcctagtaaaagacagcttctttgtgtggcaaatacacatataaatatccatcatgac
ctcaaagatgtgaagctatggcaggttcacaccctcctaaaaggattggaaaaaatagct
gtcagtgcagacattccaatgttggtttgtggagattttaattcaacccctggaagtact
tcacatgggcttcttgcaatgggcaaagttgatcaattgcatccagatctggcggtagat
cctcttggaattttgcgtccactaagcaagttgacacaccagcttcctctggtcagtgca
tactcatcatttgcgaggatgattggtgttggttatgatttggatcaccagggaaggagg
atggaccccacgacaaatgaaccattgttcacaaattgcacaagggatttcactggtacc
atggattacattttttacacagcggattcattgacagtggagtcattactggaacttttg
gatgaggatagcttgagaaaagacacagctcttccttctcctgaatggtcatcggatcat
atagcgcttctagcagaatttcggtgcacgcctagaattagacgataa
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