Phragmites australis (common reed): 133916891
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Entry
133916891 CDS
T10575
Name
(RefSeq) protein RRP6-like 1
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
paua Phragmites australis (common reed)
Pathway
paua03018
RNA degradation
Brite
Messenger RNA biogenesis [BR:
paua03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
133916891
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Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-GeneID:
133916891
NCBI-ProteinID:
XP_062216755
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Position
4:complement(46884272..46890546)
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AA seq
714 aa
AA seq
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MDGSEGVGGREEEAGDGFQLVVHGKKKKRASGQEGGSTGSDAILGSGSVRALTKDKAAAP
GTKAKVPFHDPSIPRPQDVYKIIVDNYNPFEHVWLERSEDGTRPVHPLEKLPVEQFIDRN
VPESEPVKPADLDDTPFTLVEDKEGLKELAIKLKSVTEFAVDLEHNQYRSFQGLTCLMQI
STRTEDFIVDTLKLRIYIGLYLKEYFKDPTKRKVMHGADRDIMWLQRDFNIYVCNLFDTG
QASRVLQMERNSLEHLLHHFCGVTAKKEYQTADWRPRPLPDEMIKYAREDTHYLLYIYDL
MRQRLQRESTFENDLLLEVQKRSNEICLQFYEKELLTDTSYLHIYRLQEHELNAKQLAVV
AALHKWRDHIARQEDESTGYVLPNKALIEIAKQMPTDTGHLKRIVKSKYPFVESSLDLIM
YIVWNAPEYSYAYEAIAEQLKKERLEQLALESVQASDAMTALDAEDKSNFDPADQSSVAP
LSTANVNVASGSRASFMSEASLIGSLHLDDKTRAISSSETRTSQTLSGLIRPMNKEVLSN
NRYQQAFQELKRPTLGALMGNSASGRRSEIFGGFSNEQGGSNVEKLLPFQQLSGGVKRSA
TIVPTESSYPNQGMHSDNFWIQSTQMNEVMQLGNTTYYPQLPGYNTEVVGSHYKPEGTQM
PSYLSGFDPGFQSINQRSTGTGQPPGRNKEGSFQSPMRRQSFPPSGNRYDSTYQ
NT seq
2145 nt
NT seq
+upstream
nt +downstream
nt
atggacgggtccgaaggcgtaggggggagggaggaggaggcgggggacgggttccagctg
gtggtgcatggtaagaagaagaagagggccagcggccaggagggtgggagtactggctct
gatgccattctcggttccgggtcggtgagggcgttgaccaaggacaaggcggccgcgccg
gggacgaaggcgaaggtgcccttccacgatcccagcattccccggccgcaggatgtgtac
aaaatcatagtggacaactacaatccattcgagcatgtctggctagagcgcagcgaagac
ggcacccgacctgttcacccgctggaaaaactgcctgtcgaacagttcattgatagaaat
gttcctgagagtgaaccagtaaagccagctgatttggatgatacaccgtttacgctagtt
gaagataaagaaggcttaaaggaattagctataaagttgaagagtgtaactgaatttgct
gtcgatttggagcacaatcaatataggtcatttcagggtttgacctgcttgatgcagatt
tcaacaagaacagaggactttatagtggacactctgaagcttcgtatatatattggcctc
tacttgaaagaatattttaaagatccaaccaagagaaaggtaatgcatggggcagatcga
gatataatgtggctccaacgggatttcaacatttatgtgtgcaatctttttgacacagga
caggcttcgagggtcttacagatggagagaaacagcctagagcacctattgcatcacttt
tgcggagtgacagcaaagaaggaatatcaaactgcagattggaggccgagaccacttcct
gatgaaatgatcaagtatgctagagaagatacacactatctgctctacatatatgacctg
atgagacagagactacagagggaatcaacatttgaaaatgatctgcttctagaggttcaa
aagcgcagtaatgaaatttgcttacagttttatgaaaaggagctgctgacagatacatcc
tatctccatatatacaggttgcaggaacatgaactgaatgcaaaacagctggctgttgtt
gctgctctacataagtggagagatcatatagctcgtcaagaagatgagagcactggttat
gtattgccaaataaggctttaattgagatagcaaagcagatgcctacagacactggacat
ttaaaaagaatagtgaaatcaaaatatccatttgttgagagcagtcttgacctaatcatg
tacatcgtctggaatgcacctgaatattcttatgcctatgaagcaatagctgagcaacta
aagaaggaacggctggaacagttggcgttggaaagtgttcaggctagtgatgcaatgact
gctttggatgctgaggataagagtaattttgatccagccgatcagtcttctgtagctcct
ttatcaactgcaaatgtcaatgttgcttctggcagtagggctagttttatgagtgaagca
tctttgattggtagcctgcacctggatgacaagactcgggccatatcatcatctgaaact
cggacctcccagaccttatcaggcctcatcagaccaatgaataaggaagtcctgagtaat
aatagataccagcaggcttttcaagaactgaagaggcccactttaggagctttaatggga
aattcagcatctggaagacggtcagagatttttggagggttttcaaacgagcagggtggg
agcaatgtggagaagttacttcctttccagcagctctctggtggggtgaaacgttcagct
actatcgtgcccacagaatcatcatatccaaatcaagggatgcacagtgataatttttgg
attcaatcaactcagatgaacgaagtgatgcagctaggcaacacaacttactacccacag
cttccaggatataacaccgaagttgtcgggagtcattataaacctgaaggcacgcagatg
cccagctacctgtctggttttgatcccggctttcaatcaataaaccagagaagtacagga
acgggacagcctcctggtagaaataaggaaggaagtttccagagcccaatgagacgacaa
tctttcccaccttccggtaacagatatgatagtacataccagtag
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