Phragmites australis (common reed): 133917000
Help
Entry
133917000 CDS
T10575
Name
(RefSeq) exosome complex exonuclease RRP44 homolog A-like isoform X1
KO
K12585
exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
Organism
paua Phragmites australis (common reed)
Pathway
paua03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133917000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paua03019
]
133917000
Messenger RNA biogenesis [BR:
paua03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
133917000
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_Dis3
PIN_4
Rrp44_CSD1
Rrp44_S1
OB_HELZ2
CSD2
Acid_phosphat_B
OB_RNB
Motif
Other DBs
NCBI-GeneID:
133917000
NCBI-ProteinID:
XP_062216903
LinkDB
All DBs
Position
4:48277134..48286300
Genome browser
AA seq
936 aa
AA seq
DB search
MLQSKSFVRKTKQGRIQKIVREHYLRDDIYCGAASCSACDAAAERKLRADAAVILVVDTN
VVLHQIDLLENPAIEDVVVLSVVLDEVKNKNLAVFNRIKALCTNDARRFYVFANENHRDT
YVKDMVGESPNDRNDRAIRVAVRWYQSHLGESAKVLLITNDRDNKRKATEEGLNAETVES
YVRSLAQPGLLDLVVVSTRGDVNMEDVEDLRPSKKKVIYSEHKPMSEITSGLRCGIYHQG
KLRVNRYNPFEAYVGSESIGDEIVICGRSNMNRAFDGDIVAVELLPQDQWHESKSFIADD
DEDDDEEDVHLVPSSADDAPRNTSSTQSTVGSSAASDSSRPIGRIVGIIKRNWNSYCGSL
EPMPMPAGSGGIAHALFVSKDRRIPKIRIQTRQLENLLNKRIIVTVDSWDVLSRYPSGHY
VRTIGNIGDKETETEVVLIENDINTRPFSTQVLACLPPLPWTLSPEDLANPNRQDLRHVR
VFSVDPPGCRDIDDALHCTPLPNGNFEVGVHIADVTNFVHPSTPLDEEAAQRGTSVYLVG
QRIDMLPKPLTEDVCSLRADVERLAFSVIWEMTPHADIISTRYTKSVIKSCAAMSYVEAQ
ARMDDSRLVDPLTVDLRNLNSLAKIMRQRRCERGALTLASAEVKFEIDSETHDPLDIGIY
QIREANQMIEEFMLAANVSVAEKILKHFPLCSLLRRHPSPTKEMLEPLLRTASSVGLNLD
VSSSKALAESLDNAKRDDPYFNKLIRILATRCMTQAVYFCSGDLSFSEYYHYGLAAPLYT
HFTSPIRRYADVVVHRLLAAALDIAKLPPVFLDGPQLTGIADNLNYRHRNAQMASRASVE
LHTHIYFRTRPTDTEARIVKVKANGFIVFVPKFGIEGPIYLTPKGDKGGDWVVDEVHQRV
NKPGTNISYAVLQAVRIHMEVVEPQPHRPKLQLTLI
NT seq
2811 nt
NT seq
+upstream
nt +downstream
nt
atgctgcagagcaagtcgttcgtgaggaagacgaaacaaggccgcatccaaaagatcgtc
agggagcactacctccgcgacgacatatactgcggcgccgcctcctgctccgcctgcgac
gccgctgccgagcgcaaactccgcgccgacgcggccgtcatcctcgtcgtcgacaccaac
gtcgtgctccaccagatcgatttgttggagaatccagcgattgaagatgttgtcgtgctg
tcggtggtgctggacgaggtgaagaataaaaaccttgcggttttcaacaggatcaaggcc
ctgtgtaccaacgatgcacggaggttctacgttttcgccaacgagaaccacagggatact
tatgtcaaagatatggttggggagagccctaatgatcgtaatgacagagcgattcgtgtt
gctgttcgctggtaccaaagtcatcttggtgagagtgcgaaggttttgctgattactaat
gacagagacaacaaacggaaagctactgaagaaggccttaatgccgagacagttgagtca
tatgtaagatcacttgcgcagcctggtttgctcgatttggtggttgtttcaactagggga
gatgttaacatggaagatgtagaagatcttagaccatccaaaaagaaagtaatctacagc
gagcacaaaccaatgtcagaaattacatctggtctgcgttgtggaatctaccatcaaggg
aagcttcgagttaatcgttacaatccatttgaagcatacgttggaagcgagagcattggt
gatgagattgttatctgtggccgttcaaatatgaacagggcctttgatggtgatattgtt
gccgttgagctcttgccacaagatcaatggcacgagtcaaagtcatttattgcagatgat
gatgaagatgatgatgaagaagatgtccatctggttcctagtagtgctgatgatgctcct
cggaacaccagttccactcagtcaacagttgggtcatcagctgcttctgattctagtcgt
ccaattggacgcattgttggtataatcaagcgaaattggaattcgtactgtgggtccttg
gagccgatgcccatgcctgctggtagcgggggcattgctcatgctctatttgtttcaaaa
gatcgaagaatacctaagattcgaattcaaaccagacagcttgagaatctcctgaacaaa
agaattatcgttacagttgattcatgggatgttttgtctcgatatccatctggacactat
gtacgaaccattgggaatatcggtgacaaggaaactgaaacagaggttgtcttaatagag
aatgatatcaacactagacctttctcgacacaagtccttgcttgtttgccacctttgcct
tggacattgtcacctgaggatttggctaatcctaatagacaagacttgcgccatgtgaga
gtctttagtgtggacccacctggttgtagggatattgatgatgcactacattgcacgcca
cttccaaatgggaattttgaagttggagttcatattgctgatgtcactaattttgttcac
cctagtacccctcttgacgaggaagctgcacaaaggggcacctctgtttatcttgttggg
cagaggatcgatatgcttccaaagcctctgactgaagatgtttgttctcttcgtgctgat
gttgagaggttggcattctctgtcatttgggaaatgactcctcatgctgatatcatatcc
acgagatatacaaagagtgttatcaaatcttgtgcggcaatgtcttatgtggaagcccaa
gcaagaatggatgacagccgtttggtcgatccactaactgtagacttgcggaacctaaat
tcattagcaaagatcatgagacagcgacgctgtgaaagaggggctctgactcttgcttct
gcagaagtaaaatttgaaatcgatagtgaaactcatgatcctcttgacataggaatttat
caaattcgcgaggcaaatcaaatgattgaagagtttatgttggctgcaaatgtttctgtt
gctgagaagattttgaagcacttccccttgtgttcattgctaaggcgccatcctagccca
acaaaagagatgcttgagccattacttcgtactgcctcttctgttggcctaaatctggat
gtttcatcctcaaaagcattagctgaatcacttgataacgcaaagagagatgacccatat
ttcaataagcttatcagaattttggcgactagatgcatgacacaagccgtctatttttgc
agtggagatttgagcttttctgagtattaccattacgggcttgcagctcctctatacact
catttcacttctcctattcgcagatatgcagatgttgttgtgcataggttgctagctgct
gctctagatattgcgaagcttccaccggtctttctggatggtccacaacttacaggcatc
gcggacaacttgaattacaggcaccgaaatgctcagatggcaagccgagcatcagttgag
ctccacacccacatatatttcaggacaaggccaactgatactgaggctaggatagtaaaa
gtcaaggcaaatggtttcatagtcttcgtcccaaagtttggcatagaagggccaatctac
cttactccgaagggagacaagggtggtgattgggtggttgacgaggtacaccagagagta
aacaagcccggaacaaacatcagttatgctgtcctgcaggctgttaggattcatatggaa
gtggttgagcctcaacctcaccgtccaaagctgcaactcactctcatatga
DBGET
integrated database retrieval system
