Phragmites australis (common reed): 133917031
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Entry
133917031 CDS
T10575
Name
(RefSeq) B-type cell cycle switch protein ccs52A-like
KO
K03364
cell division cycle 20-like protein 1, cofactor of APC complex
Organism
paua Phragmites australis (common reed)
Pathway
paua04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
133917031
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
paua04121
]
133917031
Ubiquitin system [BR:
paua04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
APC/C
Target recognizing subunit
133917031
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
Beta-prop_WDR3_1st
Beta-prop_THOC3
Beta-prop_WDR5
WD40
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_Prp19
Beta-prop_CAF1B_HIR1
Beta-prop_WDR3_2nd
Beta-prop_WDR19_1st
Beta-prop_TEP1_2nd
Beta-prop_EML
EIF3I
WD40_MABP1-WDR62_2nd
WD40_Gbeta
Beta-prop_WDR36-Utp21_2nd
ANAPC4_WD40
WDR55
Beta-prop_Aladin
Beta-prop_IFT140_1st
Beta-prop_WDR36-Utp21_1st
Beta-prop_RIG_2nd
Beta-prop_WDR90_POC16_2nd
eIF2A
Beta-prop_IFT122_1st
WD40_MABP1-WDR62_1st
Beta-prop_HPS5
WDR90_beta-prop_4th
Tricorn_2nd
Beta-prop_RIG_1st
Beta-prop_WDR41
Beta-prop_Vps41
Peptidase_M10_C
Beta-prop_DCAF4
Beta-prop_SPT8
MIOS_WD40
Beta-prop_SCAP
Beta-prop_VPS8
Aldo_ket_red
Motif
Other DBs
NCBI-GeneID:
133917031
NCBI-ProteinID:
XP_062216955
LinkDB
All DBs
Position
4:48619934..48624047
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AA seq
520 aa
AA seq
DB search
MDHRHHHHQQPPSPMENSAAGSSKPPTPASTPNSLLASARPSRPSATPPHPSTPASAPTP
ASRTVYSDRFIPSRTGSNLALFDLAPSPSPHDAAATASGTTASSGSAPTTSPYCALLRAA
LFGPDTPDRVASSATACSSSSAGASPVGTPATGNIFRFKAEVPRNAKRALFSGGDEEETL
FLGVFTTRGAGPRKIPRSPYKVLDAPALQDDFYLNLVDWSSHNVLAVGLGNCVYLWNACS
SKVTKLCDLGADDNVCSVGWAQRGTHLALGTNQGKVQIWDATRCKRIRTMESHRMRVGAL
AWSSSLLSSGSRDKSILHHDIRVQEDYVSKLTGHKSEVCGLKWSYDNRQLASGGNDNRLF
VWNPHSTQPVLKYTEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDT
GSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTYRVLYLAISPDGQTI
VTGAGDETLRFWNVFPSPKSQSSDSLSCIGATSFVRSYIR
NT seq
1563 nt
NT seq
+upstream
nt +downstream
nt
atggatcaccgccaccaccaccaccagcagccgccgtcgccgatggagaactccgcggcg
gggtcctccaagccgcccaccccggcctccacgcccaactcgctcctcgcctccgcgcgc
ccctcccgcccctctgccacgccgccgcatccctccacgcccgcctccgcgcccacgccg
gcctcccgcactgtctacagcgaccggttcatccccagccgtaccggatccaacctcgcg
ctcttcgacctcgccccttcgccctccccccacgacgccgccgccaccgccagcggcacg
accgcctcctccggatctgcgcctaccacgtcaccgtactgcgctctcctccgcgccgcg
ctgttcgggcccgacacgccggaccgggtggcgtcgtcggccaccgcgtgctcgtcctcg
tcggcgggtgcgtcgcctgtgggcaccccggcaaccgggaacatattcagattcaaggcg
gaggtgccccggaatgcgaagagggcgcttttttccggcggggacgaggaggagacgctg
ttcctcggggtgttcacgacgaggggcgccgggcctaggaagatcccaaggtcgccttac
aaggtgttggatgcccccgcattgcaggacgacttctaccttaatcttgtggattggtcg
tcacacaatgtcctcgctgtaggattgggcaattgtgtatacttgtggaatgcatgcagc
agcaaggtcaccaagctatgcgatttgggagcggacgacaatgtttgttccgtgggctgg
gcacagcgcggcactcacctagctttagggacaaatcaaggcaaagttcagatttgggac
gcaactcgttgtaaaagaataagaacaatggaaagccatcgcatgcgtgtaggtgctctt
gcatggagttcttcgttgctttcttctggaagtcgcgacaagagcatccttcaccatgat
atccgtgttcaagaagattatgtcagcaaacttactgggcataaatctgaggtatgtggg
cttaaatggtcttatgacaaccgtcagcttgcatctggtgggaatgacaacagacttttt
gtttggaatccacattcgacacaaccagtattgaagtatacggagcacacagcagctgtc
aaagctattgcctggtcacctcatcttcatgggcttctggcatctggtggaggaaccgct
gatagatgcatacgattttggaatacaaccaccaatacacacttaagttgcatggacact
ggaagtcaggtctgtaatcttgtgtggtcaaaaaacgtaaatgagcttgttagcacccat
ggatactctcagaatcagataattgtttggcgatatccaacaatgtcgaagcttgccaca
ttgacaggccatacatacagagtattgtatttagctatctctcctgatggtcagactata
gttactggggctggtgatgaaacactgcggttttggaatgtgttcccctctccgaaatct
cagagttctgacagcttaagttgcattggagcaacatcatttgttaggagttacatccgg
tga
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