Phragmites australis (common reed): 133917055
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Entry
133917055 CDS
T10575
Name
(RefSeq) endoribonuclease Dicer homolog 1-like
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
paua Phragmites australis (common reed)
Brite
Chromosome and associated proteins [BR:
paua03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
133917055
microRNA pathway
RISC loading complex
133917055
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GFIT
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NCBI-GeneID:
133917055
NCBI-ProteinID:
XP_062216993
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Position
4:48885074..48899097
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AA seq
1923 aa
AA seq
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MAGGGGDGGGGEHAAASYWYDACEDGSSLLCGIDFAASADFDPGLIPAIDCGADDGFVAE
IDRILESINAESALAPPPAPAPVVPPPPPPPQLQEAFAAAVNNAVAVVDAAQRSQGVEAR
KEPRRESLVAAANGGSGGEWRDGKRQRLTAGGAGGPRQDWRRRPMPSLPPPSRVWEDRRG
RREYERPRKRDRDSHSGRDHHRREARGFWERDRGGKMVFRHGLWEVDVDREGKRARTQDG
GAVENKGEADRMGSSQMEKPVTEEQARQYQLEVLEQAKSRNTIAFLETGAGKTLIAVLLI
KSVCEKMLKENKKMLAIFLVPKVPLVYQQAEVIRDRTGYRVGHYCGEMGQDFWDARKWQR
EFESKQVLVMTAQILLNILRHSIIKMDSIHLLILDECHHAVKKHPYSLVMSEFYHTTPKD
KRPAVFGMTASPVNLKGVTSQEDCAIKIRNLESKLDSVVCTIKDRKELEKHVPMPLEVIV
QYDKAATLWSLHEQIKQMEAAVEEAALSSSKRTKWQFMGARDAGSRDELRLVYGVSERTE
SDGAANLIQKLRAINYALGELGQWCAYKVAQSFLTALQNDERANYQVDVKFQESHLKKVV
DLVHCQLTEGAAIKSESNDVEMHNAQNHKPNELEEGELPDSHAVSVGEHVDEVIGAAVAD
GKVTPRVQALIKILLKYQHTEDFRAIIFVERVVTALVLPKVFAELPSLGFIRCASLIGHN
NNQEMRSCQMQDTIARFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRG
RARKPGSDYILMLERGNLSHEAFLRNARNSEETLRKEAIERTDLSHLDGTSILSPVDASP
DSMYQVESTGAVVSLNSAVGLIHFYCSQLPSDRYSILRPEFIMQKHDKPGGSAEYSCKLQ
LPCNAPFEKLEGPICSSIRLAQQAVCLAACKKLHEMGAFTDMLLPDRGSGEGEKTEQNDE
GDPLPGTARHREFYPEGVAEILQGEWILSGRDSFQSSQFIKLYMYSVNCVDIGSSKDPFV
TQLSNFALIFGNELDAEVLSMTMDLFVARTMITKASLVFRGPIEITESQLVLLKSFHVRL
MSIILDVDVDPSTTPWDPAKAYLFVPVGAEKCMDVLREIDWTLVNSIVNSDAWNNPLQRA
RPDVYLGTNERSLGGDRREYGFGKLRHGTAFGQKSHPTYGIRGAIAEFDVVKASGLVATR
DRGHFNDYQNHGKLFMADSCWDAKDLAGMVVTAAHSGKRFYVDSICYNMNAENSFPRKEG
YLGPLEYSSYADYYKQKYGVELIYMKQPLIQARGVSYCKNLLSPRFEHSEARDGEFSENL
DKTYYVYLPPELCLVHPLPGSLVRGAQRLPSIMRRVESMLLAIQLKDIIGYPVPATKILE
ALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNMILYQY
ALNKSLQSYIQADRFAPSRWAAPGVLPVFDEETRDSEQSIFDEESTPSTELQKDPYDDYA
DSIQEDGEIVGDSSCYRVLSSKTLADVVEALIGVYYVAGGKIAANHLMKWVGIHAELDPQ
EILPSKPYNIPESITKSINFDTLEGALGIKFQTKGLLVESITHASRPSSGVSCYQRLEFV
GDAVLDHLITKHLFFTYTDLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALET
QIREFAKDVQEELLKPGFNSFGLGDCKAPKALGDIVESIAGAIFLDSGYDTSVVWKVFQP
LIDPMVTPDTLPMHPVRELQERCQQHAEGLEYKASRIGNIATVEVFIDGVQIGVAQNPQK
KMAQKLAARNALVILKEKETAAKKETEKEGEKKNGSQMFTRQTLNDICLRRQWPMPQYRC
INEGGPAHAKRFVYAVRVNTSDSGWTDECIGEPMPSVKKSKDSAAILLLELLNRNYSYKP
DGK
NT seq
5772 nt
NT seq
+upstream
nt +downstream
nt
atggcgggaggaggcggtgatggtggcggcggtgagcacgcggcggcgtcgtactggtac
gacgcgtgcgaggacggcagctcgctgctctgcggcatcgacttcgccgcgtccgctgac
ttcgacccgggcctcatacccgccatcgattgcggcgcggacgacggcttcgtcgctgag
atcgatcggatactcgagagcattaacgccgagagcgccctagcgcccccgcctgcgcca
gcacctgtggttccgccgccgccgccgccgccgcagttgcaggaggcgtttgctgctgcg
gtcaacaatgccgtggcggtggtggacgcggcgcagaggagccagggcgtggaggcgagg
aaggagccgaggagggagtcactggtcgccgcggccaatggtggcagcggcggggagtgg
agggacgggaagcgccagcgtctcactgcgggtggtgccgggggaccacggcaggactgg
cgacggcgtccgatgccctcgctgccgcccccctcgcgtgtgtgggaggaccggcgtggg
aggcgggagtacgagagacctcgcaaacgcgaccgcgacagtcactcgggccgtgatcac
caccggcgcgaggcccggggtttctgggagcgtgaccgcggcggcaagatggtgttccgc
catggcttatgggaggttgatgtggaccgcgagggaaagcgtgccaggacgcaggatgga
ggtgctgtggagaataagggggaggccgacaggatggggtcctcgcagatggagaagcct
gtcactgaggagcaggcgagacagtaccaactcgaggtgcttgagcaagcaaagagcagg
aacacaattgccttcctcgaaactggtgcagggaagactctcattgctgtgctgctcatc
aaaagcgtgtgtgaaaaaatgctcaaggagaacaagaaaatgcttgctatattcttggtg
cctaaggtgcctcttgtgtatcagcaagctgaagtgatacgtgataggactggttatcgg
gttgggcattactgcggggagatggggcaagatttctgggatgctagaaagtggcaacgt
gagtttgagtcaaaacaggtactagttatgacagctcaaattttgttgaacatcctcaga
cacagtattattaaaatggattcaatacatcttttgattttagatgagtgccatcatgca
gtgaaaaagcacccatattctctagtgatgtcagaattttatcacacaactccaaaggat
aagaggcccgctgtttttggcatgacagcttcacctgttaacttgaagggagtgactagt
caagaggattgtgctatcaagatacgaaatcttgagagtaaactggattctgtagtatgt
actatcaaagatcgaaaagagcttgagaaacatgtccccatgcctttggaagtcattgtc
caatatgacaaagcagccactctttggtccttgcatgaacaaatcaaacaaatggaggct
gcagttgaagaagctgcactttctagttctaaaagaactaagtggcagttcatgggagct
agggatgctggttctagagatgagctgcgccttgtctatggtgtttctgaacgtacagaa
agtgatggtgcagctaatttgatccagaaattgagggctataaattatgctttaggtgaa
ctaggacagtggtgtgcttataaggtcgcacaatcctttttgacagcattacaaaatgat
gaaagagctaactatcaggttgatgtcaagtttcaagagtcacatttgaagaaggtcgtt
gatttggtacactgccagttgactgaaggggctgcaataaaaagtgagagcaatgatgtt
gaaatgcataatgctcaaaaccacaagccaaatgaacttgaggagggggaactgcctgat
agtcatgctgtttctgtaggtgaacatgtagatgaagtcattggtgctgcggtggcagat
gggaaagttactcctcgggtgcaggctttaatcaaaatacttctcaagtatcagcatact
gaggattttcgtgctataatctttgtggagcgagtggttacagcattagttcttcctaag
gtctttgccgagcttccatcattaggctttatccggtgtgcgagcttgataggtcataat
aataatcaagagatgcggtcatgccaaatgcaggatacaattgcgagatttcgtgatggc
cgtgttacgctgttagttgcaactagtgttgcagaggaagggcttgatattcgacaatgc
aatgttgtcattcgctttgaccttgcaaagactgtcttggcttacatacagtctcggggt
cgtgcgagaaagcctggatctgactacatattgatgcttgaaaggggcaatttgtcacat
gaagctttcttgaggaatgctcggaatagtgaggagacactgagaaaagaagctattgaa
agaactgatctcagtcatcttgatggtacttctatattgagccctgttgatgcatcaccg
gattctatgtatcaggtcgaatcaacaggtgcagttgtcagtttgaactctgcagttgga
ctcatacatttttactgttcacagcttccgagcgacagatactcaattcttcgtccagaa
ttcattatgcaaaagcatgacaagccagggggttcagcagaatattcttgcaagcttcaa
ctcccttgtaatgctccatttgagaagcttgaaggtcctatatgcagctccatacgtctg
gcacaacaagctgtttgtttagctgcttgtaagaagctacatgagatgggtgccttcaca
gatatgcttttacctgatagaggaagtggggaaggggaaaagactgaacagaatgacgaa
ggtgatccactccctgggacagcacgccatagagagttctatcctgaaggtgttgctgaa
attctgcagggagaatggattttatctggacgagatagtttccaaagctctcaatttatt
aagttatatatgtactctgtgaactgtgtggacattgggagttcaaaggaccctttcgtt
acacaactttcaaattttgctcttatttttggcaatgagctggatgcagaggttttatcg
atgacgatggatctctttgttgctaggacaatgataacaaaggcatctctcgtattccgt
ggaccaattgaaattacagaaagtcagctggtcctactgaagagctttcatgttaggctc
atgagcataatacttgatgttgatgttgatccctcgactacaccttgggatccagcaaag
gcatacctttttgttcctgtcggggctgagaagtgtatggatgttttaagagagatcgat
tggaccttagtcaatagcattgtgaactctgatgcctggaacaaccctcttcagagggca
cgcccagatgtctatctaggcaccaatgaaaggtcacttggtggagataggagggagtat
gggtttgggaaattgcgccatggaactgcttttggacagaagtcccatcctacttatggt
attagaggagccattgctgaatttgatgttgtcaaagcatctggattagttgctactcgt
gacagaggtcattttaatgattatcaaaaccatggaaagttgttcatggcagattcatgt
tgggatgctaaagatcttgctggaatggttgtaactgctgcccactctggaaagaggttc
tatgttgacagtatttgctataacatgaatgcagagaattcatttcccagaaaggagggc
tacctgggtccattggagtacagctcttatgctgattactacaagcagaagtatggtgtg
gagttaatttatatgaaacagcctcttatacaggcacgtggtgtttcatattgcaaaaat
ctactttctcctcgatttgagcattctgaagctagagatggtgaattctcggagaacctt
gacaaaacatactatgtatatttgccacctgaactgtgccttgtgcatccccttcctgga
tcactggttcgtggagctcagaggttaccctcaataatgagaagagtggagagcatgctg
cttgcaattcaattgaaggatataatcggttatcctgttcctgcaactaagatattagaa
gccttgactgctgcatcatgccaggaaacattctgctatgaaagagcagagctgctgggt
gatgcatacctgaaatgggttgtgagtagattccttttcctaaaatatcctcaaaagcac
gagggacagcttacaaggatgcggcagcagatggttagtaacatgattctgtaccaatat
gctctgaataaaagcctccaatcttatatccaagcagatcggtttgctccatcaagatgg
gcagctcccggagtgttacctgtatttgatgaagaaaccagagattctgaacaatccatc
tttgatgaggaatcaactcctagtactgaattacaaaaggatccttatgatgactatgca
gatagcatccaagaggacggtgaaattgtgggagattctagctgctatcgagttctatca
agcaaaacattagcagatgtcgtggaagcacttattggtgtctattatgtagcaggaggg
aaaattgctgcaaaccacctgatgaagtgggttgggattcatgcagagttggatcctcag
gagatccttccttcgaagccatataacatacctgagagcataacaaaaagcatcaatttt
gacacattagaaggtgcattgggtatcaaatttcagactaaaggcttacttgttgagtct
ataacacatgcatcaaggccatcatctggtgtttcctgctaccagcgtttggagtttgtt
ggtgatgctgtgttggatcatctcattacgaaacatttgttttttacatatactgacctt
ccacctggccgcttgactgacttgagagctgcagctgttaataatgagaactttgcaagg
gttgcagttaagcataagctgcatgtacatcttcgccatggatcatctgcgttggagaca
cagattcgggagtttgcaaaggatgtccaggaggagcttttgaaaccaggattcaattct
ttcgggcttggggattgtaaggctcctaaggctctaggtgacattgttgaatctattgct
ggtgcgatattcctggatagtgggtacgatacctccgtagtctggaaggttttccagcct
ctcattgatcccatggtaacaccggacacccttccgatgcaccctgtaagggagctccaa
gagcgctgccagcagcatgctgaaggcttagaatacaaagcatcccgaataggcaatata
gctactgttgaagtctttattgatggcgttcagattggtgtagctcagaacccacagaag
aagatggcacagaagttggcggcgagaaatgcacttgttatcttgaaggagaaggaaacg
gcagcaaaaaaagaaaccgaaaaggaaggcgagaagaaaaacggttctcagatgttcact
aggcagaccctgaacgacatctgcttgagaaggcaatggccaatgccacaatacaggtgc
ataaacgagggcggccctgcccatgctaaaagatttgtttatgcggtaagggtgaacaca
tcggacagtggatggactgacgagtgcattggagagccaatgccgagtgtgaagaagtct
aaggactctgccgccattcttctccttgagcttttaaatcgaaattactcttacaagcct
gacggcaaatag
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