Phragmites australis (common reed): 133917167
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Entry
133917167 CDS
T10575
Name
(RefSeq) uncharacterized protein LOC133917167 isoform X1
KO
K03514
non-canonical poly(A) RNA polymerase PAPD5/7 [EC:
2.7.7.19
]
Organism
paua Phragmites australis (common reed)
Pathway
paua03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133917167
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paua03019
]
133917167
03016 Transfer RNA biogenesis [BR:
paua03016
]
133917167
Enzymes [BR:
paua01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
133917167
Messenger RNA biogenesis [BR:
paua03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
133917167
Transfer RNA biogenesis [BR:
paua03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
133917167
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTPAP-like_central
PAP_assoc
NTP_transf_2
TUTase
PAP_NTPase
DNA_pol_B_palm
Polbeta
PRR22
LPD29
Nrap_D2
Motif
Other DBs
NCBI-GeneID:
133917167
NCBI-ProteinID:
XP_062217160
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Position
1:complement(36927757..36944704)
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AA seq
582 aa
AA seq
DB search
MEAEAAAAAATATFVYDALPGLTLAFSPEEVLDGGAEPRPAPAAAGQDEDDATATYAVFR
NEITAAGDALVDIPAADFFSLDVSASASVEVEPDSPQAPAPASTAAVTPSSSRAADEQPV
QGSERAWFMGGRRFRSPMLQLHKEILDFCDFISPSAEEQSSRTAAVQAVSDVVKHIWPQC
KVEVFGSFRTGLYLPTSDIDVVIFESRVKTPQVGLYALAKALTQKGVAKKIQVIAKARVP
IVKFVERNSGISFDISFDVDGGPQAADFIKDAVKKLPALRPLCMILKVFLHQRELNEVYT
GGIGSYALLTMLITHLQLVWGGKDILGCHQSKEHNLGILLVKFFDFYGRKLNHWDVGISC
NSARNFFLKRDKDFVNLDRRHLLAIQDPMVPDNDIGKNSFNYFKVKSAFSNAFSVLTDAN
LITSLGPNRSILGTIVRPDSVLLDRKGWNNEGTIADMLTEPWEPVTRQFDSENDAMYNWQ
VIDEEPFPRNSQSTSEDTSSSPLQKRKSKSNQKSRKKAKADVSGSDNVTNGFREDRVHKR
VKGLVQGERRHHSAGSSKRRKGPRVYDRFTNTLPQYAHVSKW
NT seq
1749 nt
NT seq
+upstream
nt +downstream
nt
atggaggctgaagcggccgcggccgcggcaaccgcgaccttcgtctacgacgccctcccg
gggctaaccctggccttctcgccggaggaggtccttgacggcggcgccgagccccgcccg
gcccccgccgccgcggggcaggacgaggatgacgcgaccgcgacctacgccgtatttcgc
aacgagatcacggcggccggggatgcgctcgtcgacatccccgcagccgacttcttctcg
ctagacgtctccgcctccgcctccgtcgaggtcgagccggattccccgcaggcgccggcg
cctgcctcaacggcggcggtgacgccctcgagctcccgcgccgcggatgagcagccagtg
caggggtcggagcgcgcgtggttcatgggagggaggcggttcaggagccccatgctgcag
ctacacaaggagattcttgacttctgcgattttatctcaccttctgctgaagagcaatct
tcacggacagctgctgtgcaagctgtctccgatgttgtcaaacatatatggcctcagtgc
aaggtggaagtctttggatctttcagaacagggctctatctaccaacaagtgatattgat
gttgttatattcgagtccagggttaagactcctcaagttggcctatatgctcttgcaaaa
gcattgactcagaaaggtgttgctaaaaagatacaggtaattgcaaaggctcgtgtgcca
attgtcaagtttgtggaaagaaatagtggaatatcttttgacatcagctttgatgtggat
ggtgggccgcaagcagcagacttcatcaaggatgctgtgaagaagttgcctgctttaaga
cctttatgcatgatcctgaaggtttttctgcatcaaagagagctcaatgaggtctataca
ggtggaattgggtcatatgctcttctcacgatgctgatcacacatctacagttggtctgg
ggaggaaaagatattctggggtgtcatcagtccaaggagcacaatttgggaattcttttg
gtcaagttttttgatttttatggacgcaagttgaaccattgggatgttggaatatcttgc
aactccgcaaggaactttttcttgaagagagataaagactttgtgaatcttgaccggcga
caccttttagctattcaagaccccatggtaccagataatgatattggaaagaattccttt
aactatttcaaggtgaaatcagcattttcgaacgcattctctgtgttaactgatgcaaac
ttgattacaagcttgggacctaataggagtattctgggtaccattgtcagaccagattcg
gttctccttgaccggaaaggctggaacaatgaaggcacgatagctgacatgttaacagaa
ccctgggaaccagtaacccgacagtttgacagtgagaatgatgctatgtataattggcag
gtaatagacgaggaaccatttcccagaaatagtcaatccacatctgaggacactagttcg
tcaccattgcaaaaaaggaagtccaaatcaaatcagaaatcacgaaaaaaggctaaggct
gatgtctcgggcagtgataatgttacaaacgggttcagagaggatagagtccacaagcgg
gtcaaaggattggtacaaggtgaaagacggcatcatagcgcaggaagcagcaaacgtaga
aaaggaccaagggtgtatgacagatttacaaatacactcccacagtacgcccacgttagt
aagtggtga
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