Phragmites australis (common reed): 133918016
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Entry
133918016 CDS
T10575
Name
(RefSeq) SNF2 domain-containing protein CLASSY 3-like
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
paua Phragmites australis (common reed)
Pathway
paua03440
Homologous recombination
Brite
DNA repair and recombination proteins [BR:
paua03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
133918016
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
Helicase_C_2
Motif
Other DBs
NCBI-GeneID:
133918016
NCBI-ProteinID:
XP_062217783
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Position
5:35632321..35637547
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AA seq
1384 aa
AA seq
DB search
MPAPPASGSPRRRLPGPNSYEDGGGGGGRAGRAREVGAAIAGGGVGRKIIKPEPVDAVLC
DGEVPGERGRAMMAISPWTQNPRSPPSRLPVAAARPSGRSQPEIINISDDDEDEDREFRG
GFPLEKVLVIEGSGNGGMRVKEEPFDYLGCNREPSTAKGKRKRESPCKFKADARGGHHAV
ARDSGASWAGRGAAGLVVEATRSRERKEKIREVDRGGAGDQSRPGKEVLVSSEESRGAPG
KARSGRGMRSCGERGSSAAPVNRIGATVGSRIRSRARQHGRVQYGTHFAREVSDDAEEDD
EGVEQEDEGWGKMVDIMQVDEVEDSGADNEVAEEIDHEEHVEGKNGEDDHGYSEDECNEG
QAAAAADDDDDDEKGLDEEEGGNQEDRHSIYEGEEEIENEESEEDEEEFDGTGEEQRCTP
SNSIAGGSVRSGGDGTRVFRKRIFEGICLPDKPDKTIGRGIEGRTRSKTKCKDKKLLRRG
TYSKPYYIDLPDSTSESEEDIPPLVQPRGLLSSSEEYEEASRKRTKARKKRRYYGPIASD
DDSEEERAFARYVGVGSSRKPKKGASNRPAVREGCKNYDGSNPGYDGSNPWHVKHNGPNA
KGPTNISNAQDDLSFKRNAHIAQLRKRCRASKAKDAYDELLNSLFAEWENHTDGSDPAHV
QSGDSLPVVFSFGDEEEMEVKSENAKFQEELWREFDLAFESINIGSHGCEEGEINDRKKV
PPGEATSCKHGNHDFIIDEQIGVRCKHCHVVDLEIRYVLPSMGKNAAERESAINLELDSM
FKEMLTLCEENDLPVSNKNGACSFGAHKAVSVWDLVPGVKEDMFPHQQDAFEFIWKKLAG
GTTIEQLKRAADSDIVGGCVISHAPGTGKTRLAITFVQSYLEHFPQCRPVIIAPKGMLAT
WEQEFRKWKVTLPFHVLNSSEINWSEDKTIQDQVAKNGTFARRLLKDKMDQNYRRLVKLG
SWMNGTSIIGVSYSLFRKLANDEGMDGDKVRKVLLEKPDLLVLDEGHTPRNKKSIIWKAL
ANVRTEKRIILSGTPFQNNFEELYNTLCLVRPKDAMLLEKDEGKDFWTSLRLSNITKANI
EKIQRKLDPVVHIHKGNFLEESLPGLIETVVILNPLPRQKEIITSMEKTAAMGTLDGEYK
ISLASAHPSLITCAKLSRKEAFLVDNSLLESIRLNPCEGVKTRFVLEVVRLCQVLNERVL
VFSQYLEPLSLIMEQLKTRFSWTEDKEILHMSGNVVVKNRQAMMEAFNNMKSEAKVMLAS
TKACCEGITLVGASRVVLLDVVWNPSVGRQAIGRAYRIGQKKIVYTYNLIADGTKEMEKY
NRQAKKEHMSKMLFSNELQSGGCSMSPESTFNDRILEEMTAREDLKKLFVQIRIENQTNG
LVRF
NT seq
4155 nt
NT seq
+upstream
nt +downstream
nt
atgcccgcgccgccggcttccgggtccccgcgccgcaggcttcccggtcccaacagctac
gaagacggcggcggtggcggcggccgcgccggccgcgcgcgggaggtgggcgccgcaatc
gccggcggcggcgtgggtcgcaagatcatcaagccggagcccgtagacgccgtgctatgc
gacggggaggttccgggggagcgggggcgcgcgatgatggcgatttcgccgtggacacaa
aacccccgttcgccgccctcgcggctgccggtcgccgccgcccgcccctccggccgctct
cagcctgagatcatcaatatctccgatgacgatgaagacgaagatagagaatttcgtggt
ggatttccgcttgagaaagtacttgtgatcgaggggagcggcaatggcgggatgcgcgtc
aaggaggagcctttcgactatttgggttgcaatcgggagccttccaccgcaaaggggaag
cggaagagagaatccccctgtaaattcaaggctgacgcacgcggcggccaccacgcggtg
gcccgggattcgggcgcttcatgggctggccgtggtgccgcgggtcttgtcgtcgaggcc
acgaggtccagggagaggaaagagaagatcagagaggtagacagaggaggtgcgggtgac
cagtcgcgcccgggcaaggaggtactcgtctccagcgaggaatctcgcggtgctcccggc
aaggcaaggagtggaaggggtatgagatcatgcggcgagagggggagcagtgctgcgccg
gtgaaccggatcggcgccacggtcgggtcgaggatccggtcacgggcgcgtcagcatggg
agagtgcagtatggtacgcattttgctcgagaggtgtctgatgacgcagaagaggacgat
gagggagtggagcaggaggatgaggggtgggggaaaatggtggatataatgcaagttgat
gaggtggaggacagtggagctgacaatgaggtagccgaagagattgatcatgaagagcat
gtggaggggaagaacggggaggatgaccatggttatagcgaggacgaatgcaacgaaggt
caagctgctgctgctgctgatgatgatgatgatgatgagaagggattggatgaggaggaa
ggtggcaatcaagaagacagacatagcatctacgaaggcgaagaagaaatcgagaacgag
gaatcagaagaggatgaggaggaattcgatggcacaggggaggagcaacgatgcacgcct
agcaactccatagctggtggcagtgtcaggtcaggaggagacggcactcgagtattcagg
aagaggatatttgaggggatatgtttgcctgacaaaccagacaaaaccatcggcaggggt
atcgaggggcggacacgatcaaagacaaaatgcaaggacaagaaattgctcaggcgcgga
acttacagcaagccttactatattgatctgccagactcgacatcggagtcggaagaggat
ataccaccgctggtgcagccgcgagggctactgtcatcaagtgaggagtatgaggaagcc
agcaggaagcgtacaaaagcaagaaagaagagacggtactatgggccaattgctagtgat
gatgactctgaggaggagagagcgtttgcaaggtatgtcggtgtgggatcgtctcggaag
ccaaagaagggggcatccaatcggccggctgtcagggaaggttgcaaaaattatgatggt
tccaatccagggtatgatggttccaatccatggcatgtcaaacacaatggcccaaatgca
aagggtccaacgaacatatccaatgcacaggatgatctttccttcaaaagaaatgcacac
attgctcagctgaggaagcgctgccgagcatctaaagccaaggacgcgtatgatgaacta
ctcaactccttgtttgctgaatgggagaaccatacagatggttctgatcctgcacatgta
caaagtggtgatagcttgcctgtggtattctcgtttggggatgaggaagaaatggaagtg
aaatcagaaaatgctaagtttcaggaagaactgtggagggaattcgaccttgcctttgaa
tcaatcaatattggttctcacggctgtgaggagggtgaaattaatgataggaaaaaggtt
cctccaggggaagcaacttcatgcaaacatgggaaccatgatttcattattgatgagcaa
ataggagttaggtgcaagcattgtcatgttgtcgatcttgaaatcagatatgtactgccc
tctatggggaaaaatgctgcagaaagggaatcggcaataaatcttgagttggactcaatg
tttaaggaaatgctcactctttgcgaagaaaatgatttgcccgtatcgaataaaaatgga
gcatgcagttttggtgctcacaaagctgtttcagtctgggatctcgttcctggcgttaag
gaagacatgttcccgcaccagcaggatgcatttgagttcatttggaagaagttggcagga
ggtactacaattgaacagctgaaacgggccgcggactctgatattgtaggtggctgtgtg
atttctcatgccccagggactggcaagacccgactagcaatcacatttgttcaatcctac
ctcgaacattttccgcagtgtaggccggtgatcattgctccaaaggggatgctggcaaca
tgggagcaggagttcagaaaatggaaggtgacgctcccatttcatgtactgaattcatct
gagatcaactggagtgaagacaaaaccatccaagaccaggttgcaaagaatggaactttt
gctcggaggttattgaaagataaaatggatcaaaattataggcgattggtgaagttaggg
tcctggatgaatggcaccagtataattggtgtgagctactcactttttaggaagctagcg
aatgatgaaggcatggatggggataaggtgaggaaggtgcttcttgagaaacccgacctg
cttgtccttgatgaagggcacacaccaagaaacaagaagagcattatttggaaggctctt
gcaaatgtccgcactgaaaagcgaataattctatcagggactccatttcaaaacaacttt
gaggagctttataacactctgtgccttgtcaggccaaaggatgcaatgcttctggagaag
gacgaaggcaaggatttctggacctctttaagattaagtaacatcacaaaggcaaacata
gagaaaatccagaggaaactggacccagttgtgcacatccataagggtaacttccttgag
gagtctctcccaggactgatagaaacagttgtgattctgaaccctcttcctcgtcagaag
gaaatcatcacaagcatggagaagactgcagcaatgggtactcttgatggagaatacaag
atctcgcttgcatcggcgcacccgtccctcatcacctgcgcaaagctgtccaggaaagaa
gcatttctggtggacaattctttgctagagagtatacggttgaatccatgtgaaggggtt
aagacacggtttgttttggaggttgtccgtctatgtcaagtgctaaacgagcgagtgctg
gtgttcagccaatatcttgaaccattgtccttgatcatggaacagctgaaaacaaggttc
agttggactgaagacaaagagatcctgcacatgagtggaaatgtcgtggttaaaaatcgc
caagccatgatggaggccttcaataacatgaaaagcgaggccaaggtaatgcttgcatca
accaaggcatgttgtgagggcataacacttgttggggcctcacgtgtggttctccttgat
gtcgtgtggaacccttctgtcggaaggcaagcgattggccgagcttacagaattggccag
aagaagattgtgtacacatacaatctgattgcggacggcacgaaggagatggagaaatac
aacagacaagcgaagaaggaacacatgtccaaaatgttgttttcaaatgaactgcagtct
ggaggatgcagcatgtcaccagaatcaacattcaatgacaggattttggaagaaatgact
gcacgtgaagacctcaaaaaattgtttgttcagattcgcattgaaaatcaaactaatggt
ttagttcggttctga
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