Phragmites australis (common reed): 133918267
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Entry
133918267 CDS
T10575
Name
(RefSeq) uncharacterized protein LOC133918267
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
paua Phragmites australis (common reed)
Pathway
paua04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
133918267
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
paua04131
]
133918267
Membrane trafficking [BR:
paua04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
133918267
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Vps8
Beta-prop_VPS8
VPS8_N
TPR_VPS8_2
TPR_Vps41
WDR55
Beta-prop_EML_2
Beta-prop_HPS5
Beta-prop_WDR36-Utp21_1st
Beta-prop_EML
WD40_CDC20-Fz
ANAPC4_WD40
Beta-prop_WDR5
Clathrin
Beta-prop_WDR3_1st
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
WD40
Beta-prop_THOC3
WD40_Prp19
WD40_Gbeta
Beta-prop_RIG_2nd
zf_RING_Vps8
zf-RING_Vps41
Motif
Other DBs
NCBI-GeneID:
133918267
NCBI-ProteinID:
XP_062218041
LinkDB
All DBs
Position
5:1350504..1363621
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AA seq
1921 aa
AA seq
DB search
MSTSSPAMASPPPPPRHELDLDAFLPSSPTSSTASDADHRRAVDDLLLLLPSSDSDAEES
SPIPSTSREILARLRAPPPPASSPKPSPSPSPTPSASASPRRSASASSSETLSSLVSRTF
SSNGASSSSSKPLPSLFRGVRPSPKPGAALAAAAAASRAVLTPHAAAIKSRRSVSAPVEK
LLEDGSGSEASEELPSTGSLEAEVEEKRNVEVVAEATNQTAGGSGGEELEEEKHGEVGTK
ENSEPTKLVEAVTLDSVVAEDFSGHEQVDDGNLAEINQVGNRIGALDNEENADDQIRADN
CLESGQGVYPVAAVSKEIFYDDQEAEGSDSVMEEQVESESDIDKVIEERMEQLEISRKAE
KNAEKKLKASMKPLEWAEELEKRQASFGQHWEEGAAAQPMQLEGIGKGPPAIGYMQIEMD
NPLTRAIASPSFRTDHGSPQVLAVHRSYIAMGTSKGAVIIIPSRYSIHQADDTDAKMLLF
WNQGEKTQSPVTAMCFNQQGDLLLVGYGDGHMTIWDVQKAAAAKVIYGEHTAPVVHACFI
RQSKAITGDSKGVVLLHTFSIIPVINRLTVKATQRLFDGNTGIVLSACPLLVDESFGFSN
SSAQGNQTTSSGGGLGSMMGGVVGGVVGVDSGWKFFNESSSPMEDGVVVMFIMHQHALVV
RLRTNIDHVDHIETFSRPDGAREGSIAYAAWKYTSSLSDSSSLDEERLSWLALAWDRQVQ
VAKFVKAKIVKHKEWKLDSAAVGVAWLDDQMLVVLNLRGQLCLFSKDGSELRRTTFVPDG
LVFDDTILHHAHFSNRFGNPERHFNSSVAVRGATVYIIGPTFLTVSRLLPWKERIEALKR
AGDWMGALDMAMRLYDGQTQGVVDLPRTVDSIREAIMPYLVELLLSYISYVFEYISIALS
NHTGKWGESDGLIEADRSLLTQREEQYARVGGVAVEYCVHIGRNDILFDTVFSKFVAAQS
GGIFLEVLEPYILKDMLGSLPPEIMQALVEHYGGKGWLQRVEQCILHMDISSLDFNQVVR
LCREHGLYGALIYLFNQGLNDFRTPLEELLSVIQNANRKDASSTCYRMLVYLKYCFQGLA
FPPGHGIIPQSRLLSVREELLQFLLEESKSLTSEVFKGFNASCGKCPKICYLLWMDTEAT
LEVLKCAFAQDSFEPRDGPSSTIDASVSEDDEGINAGSPETRNTMVQNVVDAIIDIVGLE
NEVIRSIVTGTAESEFWPSEKEFGYIIEFVSSFVSSKRANASKRVVMHILTYLTSSYDDT
RTPTQKEKEVLQVFNAVPRNDWNSNFVLNLCLDAHFYQACGLIFTTRNQNLAALDSYMKD
KEEPFHTFIFINKKLFELADDEASSFRSTVISRFPELVKLSRECAFVLVIDHFYDEIQQI
MAELRSDRYSLYLFLKTAIEVQLSGKLDFNELSVRNNQTVELQYSSTDIEGYLQRLSNLP
KLDHNPVSINDELVELYLELLCQYERRSVLKFLETFDSYRLERCLHLCLDYGVTDAAAFL
QERVGDVGSALALVLAGLDEKISLFISSVENSFSGVASKSISETKQPDNFLEMSEAHPVL
DALHTSIGLCQRNSQRLDPEESQSLWFQLLDSFSEPLKKLYGSKDAKCARSKGSETPNEQ
PKGKKLSQQVRISAKESCLNALWKIFSQFVGEIIEAMAGYIPLPAIMAKLLSDNGSQEFG
DFKLVIHRMLSMYLYEKRILETAKSVIEDDSFYTLSVLKRGVCHGFAPQTFACCICNCSL
SKEGAMSAIRLFSCGHATHLHCESEQSRSSNRESKDGCPICLSTSSAQARNKSPISENEL
VNYSGAENEVSHGIHHIHEADHAERSRGLQHMSRYEILNNLQKAQKTFHIETVPPLKLSP
PSIYHEKIQKRTILAGEPSKHSVRSQKPQKIWQMKEQKSKQTGTRLPQKSSVLRSQKSQL
P
NT seq
5766 nt
NT seq
+upstream
nt +downstream
nt
atgtcgacttcgtcgccggcgatggcgtcgccgccgccgccaccacggcacgagctcgac
ctcgacgccttcctcccctcctctccaacctcctccacagcctccgacgccgaccaccgc
cgcgccgtggacgatctgctcctcctcctaccctcgtccgactccgatgccgaggagtcc
agccctattcccagcaccagcagagaaattttagcgcgtctccgagccccaccgccgccc
gcgtcttcccctaaaccgtcgccgtcgccttctcctaccccatccgcgtccgcgtccccg
aggagatccgcatccgcctcgtcgtcggagaccctctcttcactagtttcgagaaccttc
tcgagcaacggtgcctcctcctcgtcgtcgaagccgctcccctcgctcttccgcggcgtc
cgccccagcccaaagccaggcgccgcgctagccgctgctgccgcagcatcccgcgccgtc
ctcaccccgcacgccgctgccattaagtcccgccgatcagtctcggcgcctgtcgagaag
ctcctggaggatggcagtggctcagaagcctccgaggagctcccttccactggaagcttg
gaagcagaggtagaagagaagcggaatgtggaagtggttgctgaggcgaccaatcaaact
gctggtgggagtgggggtgaggaattggaagaggagaaacatggagaagtgggaactaaa
gagaattctgagcctacgaagctggtggaggcagttactctggattctgtagttgcggag
gatttcagtgggcatgagcaggttgatgatggcaatttggcagaaatcaaccaagttggg
aatcgaattggtgctctcgataatgaggaaaatgcagacgaccaaatcagagctgataat
tgcttggagtctggtcagggtgtgtatccagttgcggctgtttccaaggaaattttttat
gacgaccaggaagctgaaggatccgacagtgtcatggaagagcaagtggaatctgagagc
gacattgataaggtgatcgaagaaaggatggagcaattggagatcagcaggaaggctgag
aagaatgcagagaagaagctgaaggcgtcaatgaaaccgttggagtgggcagaggagctt
gagaagaggcaggcctcgtttgggcagcactgggaggagggagcagctgcgcaacccatg
caactagaggggattggaaagggcccaccagctatcggatacatgcaaattgagatggat
aaccctttaactcgtgctatagcctcaccgtcgtttcggacggaccatggctctccccag
gtgctggcagttcataggagctatatagcgatgggcacgtctaaaggtgctgtcatcatc
attccaagcagatactccattcatcaagctgatgatacagacgcaaagatgctgttgttt
tggaaccaaggtgagaagactcaatcaccagtgactgccatgtgctttaaccagcaaggg
gatcttctactagtaggatatggtgatggtcacatgacaatttgggatgtacagaaagct
gcggcagcaaaagtcatatacggtgagcatacagcaccagtagtgcatgcttgttttatc
cgccaatctaaagccatcactggtgattcaaaaggggtagttctattgcacacattttcc
attatccctgtgattaatcgcttgactgtcaaggcaacccagcgcctttttgatggaaat
acgggaattgtgctctcagcctgtcctcttctagtggatgaatcctttggttttagcaac
tcatctgcccagggaaaccaaacaacttcctctggtggtggtcttggcagcatgatggga
ggtgttgttggaggtgtagttggagtagattccggatggaagtttttcaatgaaagttct
tctccaatggaggatggtgttgtagtcatgtttattatgcatcaacatgctcttgtggtt
agactccgtaccaacattgaccatgttgaccatattgagaccttctctagaccagatgga
gcacgagagggctccatcgcttatgctgcatggaaatacacatcatccttgagtgattca
tcatcactagatgaagaacgactatcgtggcttgcacttgcatgggaccgccaagtgcaa
gtggcgaagtttgttaaagcaaagatagttaaacacaaggaatggaagcttgatagtgca
gctgttggtgtcgcctggttagatgatcagatgttagttgtccttaatttgagaggacag
ctctgtttgttctctaaagatggcagtgagcttcgcagaaccacctttgttcctgatggc
cttgtgtttgatgacaccattctgcaccatgcacatttttctaacaggtttggtaaccca
gagaggcattttaacagttcggtagcagtaagaggtgctacagtgtatattattgggcca
acctttctcacagtttcccgacttcttccgtggaaagaacgcattgaagcactaaagagg
gccggtgactggatgggtgcactggacatggcaatgaggctttatgatggtcaaacgcag
ggtgtcgttgatctcccgagaacagttgattctattagagaagccataatgccgtactta
gtagagttgctgctatcatatatcagttatgtcttcgaatatatttcaattgcattgtca
aatcataccgggaaatggggagaatcagatggcctgatagaggctgatagatccttgttg
acacaaagagaggaacaatatgctcgtgtaggaggggttgcagttgagtattgtgtccac
attgggcgtaatgacatccttttcgacacggtcttctcaaagtttgttgctgcacaaagt
gggggtatatttctggaggtactagagccctatatattgaaggatatgcttggttctttg
ccacctgagattatgcaagcgctagtagagcattatggtggcaaaggatggttgcagcga
gttgaacaatgcattcttcatatggatatttcttcattggattttaatcaggtagtcaga
ctgtgtcgtgaacatgggttgtatggtgcactaatttatttatttaaccaaggtttgaat
gatttccgtactcctttagaggaacttctatcagtcattcagaacgccaatagaaaagat
gcttcttctacttgctacaggatgcttgtttatctgaaatattgctttcagggcctggca
tttcctccagggcatggaataattccccaatcccgccttctctcagtgagagaagaactt
ctgcaatttctgcttgaggagtctaagtcgctcacttctgaagtatttaagggtttcaat
gcttcttgcggaaaatgccccaaaatatgctatctgctatggatggatacagaagccact
ctggaagttctcaaatgtgcttttgcacaggacagttttgaacctagagatggcccttct
agtactattgatgcatctgtctcagaggatgacgagggtattaatgctggaagcccagag
actcgaaatactatggtacaaaatgtagtggacgccatcattgacattgttggtttggaa
aatgaggtgattcgatccattgttacgggtactgctgagtcagaattttggccttcagag
aaggaatttggttatataatcgagtttgtgtcctcttttgtctccagcaaaagggctaat
gcatctaaaagagttgttatgcacattcttacttatctcacttcgtcatatgatgataca
agaacgccaactcagaaagaaaaagaagttcttcaagtctttaatgcagttccccgaaat
gactggaattctaattttgtcttgaatctctgtttagatgctcatttttatcaggcctgt
ggcttgatatttacgactagaaatcagaatttggctgcattagatagttacatgaaggat
aaagaggaaccattccacacttttatcttcatcaataaaaagttgttcgaattggcggat
gatgaagcgtcatcatttcgttccacagtaatatctcgttttcctgagctagtcaaacta
agcagggagtgtgcatttgtcttagtcattgatcatttctatgatgagatccagcaaata
atggcagagcttcgttctgatcgatacagcctatatcttttcttgaaaactgctattgaa
gtacagttgtcaggaaaacttgatttcaatgagcttagtgtcagaaacaatcaaactgtt
gaacttcagtactcttccactgacattgaaggttatctgcagaggttatcaaatctcccc
aagttagaccacaatcctgtttcaatcaatgacgagttagttgaactatatctggagctt
ttgtgtcagtatgagcgaaggtcggttctgaagttcctggagacttttgacagttacaga
ttggagcggtgtttgcatctttgtctagattatggtgttacagatgctgctgcattttta
caagagagggttggtgatgttgggagtgcccttgcacttgttctagctggacttgatgag
aaaatcagcctatttatctcttctgtggaaaattctttctctggtgttgcatcaaaaagt
atctccgagactaagcaaccagacaattttctagaaatgagtgaggcccatcccgtgctt
gatgcattacatacctccattggattgtgccaaaggaattcacagcgcttggacccagag
gagtctcagtccctttggttccaactgcttgactccttctcagagccactgaaaaagttg
tacggaagcaaggatgcaaaatgtgcccggtccaaggggagtgaaacaccaaatgaacag
ccaaagggaaaaaaactatcacagcaagtgaggatttcggctaaagaaagttgcttgaat
gctctgtggaaaatattttcacaatttgttggagaaataatagaggcaatggctgggtat
atacccctaccagcaatcatggcaaaattattatccgacaatggaagtcaagagttcggt
gatttcaaacttgtgatacatagaatgttgtctatgtatctttacgaaaaaagaatactg
gaaacagctaagtcggtaattgaggatgactcattttatactttgagcgtactaaagaga
ggagtttgtcatggatttgctccgcagacttttgcatgttgcatatgcaactgctcactt
tcgaaagaaggtgctatgtcagccatacggttattcagttgtgggcatgcaacacatctt
cactgtgagtctgagcaaagcagatcatccaatagggaatccaaagatggatgccctatc
tgtctctcaacaagtagtgcacaagcccggaacaaatcacctatatctgagaatgagctt
gtgaattattctggggctgaaaatgaagtatcacatggcatacatcacattcatgaagca
gatcatgctgagagatctcgtgggcttcaacacatgtcacggtatgaaatactgaataat
cttcagaaagcacagaagacctttcatatagaaactgtacctccattgaaactttcacca
ccatctatatatcatgaaaagatacagaagaggaccattttggcgggggagcccagcaaa
cattcagttagaagtcaaaagccccagaaaatatggcaaatgaaggaacaaaaatcaaaa
caaacagggactcggcttccgcaaaagtcaagtgtactccgttctcagaaaagtcaacta
ccgtag
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integrated database retrieval system
