Phragmites australis (common reed): 133918330
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Entry
133918330 CDS
T10575
Name
(RefSeq) spliceosome-associated protein 130 A-like
KO
K12830
splicing factor 3B subunit 3
Organism
paua Phragmites australis (common reed)
Pathway
paua03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133918330
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
paua03021
]
133918330
03041 Spliceosome [BR:
paua03041
]
133918330
03036 Chromosome and associated proteins [BR:
paua03036
]
133918330
Transcription machinery [BR:
paua03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
133918330
Spliceosome [BR:
paua03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
133918330
Complex B
133918330
Complex C
U2 SnRNP specific factors
133918330
Chromosome and associated proteins [BR:
paua03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
133918330
TFTC complex
133918330
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
CPSF_A
Beta-prop_RSE1_2nd
Motif
Other DBs
NCBI-GeneID:
133918330
NCBI-ProteinID:
XP_062218152
LinkDB
All DBs
Position
5:1969094..1974010
Genome browser
AA seq
1230 aa
AA seq
DB search
MYLYSLTLQRATGAVCAVIGSFSGRDSKKASASVSASTQEIAVARGSTLDLLRTDPETGR
LRTLLSVDVFGVIRSLAQFRLTGATKDYLVVGSDSGRLVILEYSPDRNRLDKVHQETFGK
SGCRRIVPGQLLAVDPKGRALCIAALEKQKLVYVLNRDAAARLTISSPLEAHKSNTLTFS
LAALDCGFDNPIFSAIELEYAESDRDPTGQAANQAQKLLTFYELDLGLNHVSRKASEPID
NGANLLVTVPGGGDGPSGVLVCCDNFVLYRNQGHPEIRAVIPRRADLPAERGVLIVAAAT
HRQKSLFFFLLQTEYGDIFKVDLEHSGDTVSELRIKYFDTIPVASAICVLRSGFLFATSE
FGNHALYQFRDIGRDADVESSSATLMETEEGFQPVFFQPRALKNLIRIDEIESLMPVMDM
RIANLFDEETPQVFTACGRGPRSTLRILRPGLAISEMARSMLPAEPIAVWTVKKNINDMF
DAYIVVSFANVTLVLSIGETIEEVSDSQFLDTTHSLAVTLLGEDSLMQVHPNGIRHIRED
GRVNEWRTPGKKTITKVGSNRLQVVIALSGGELIYFEMDMTGQLMEVEKQDMSGDVACLA
IAPVPEGRQRSRFLAVGSYDNTIRILSLDPDDCLQPLSVQSVSSAPESLLFLEVQASVGV
EDGAEYPANLFLNAGLQNGVLFRTNVDMVTGQLSDTRSRFLGLRPPKLFPCSVSHRQAML
CLSSRPWLGYIHQGHFLLTPLSCDTLESAASFSSDQCSEGVVAVAGDALRIFTIERLGET
FNETAIPLRYTPRKFVILPKKKYLAVIESDKGAFSAEEREAAKKECLEASGAVENGNANN
GDQMENGDGQEYGAEEGSTFPDEQYGYPKAESERWVSCIRILDPRSRDTTCLLELQDNEA
AVSICTVNFHDKEHGTLLAVGTAKGLQFWPKRSLAGGFIHIYKFVDEGRSLGLLHKTQVE
EVPLALCQFQGRLLAGVGSVLRLYDLGKRKLLRKCENKLFPRTIVSIHTYRDRIYVGDMQ
ESFHYCKYRRDENQLYIFADDSVPRWLTAAQQVDFDTVAGADKFGNIYFARLPQDISDEI
EEDPTGGKIKWEQGKLNGAPNKVEEIVQFHVGDVVTCLQKASLIPGGGECLIYGTVMGSV
GALFAFTSREDVDFFSHLEMHLRQEHPPLCGRDHMAYRSAYFPVKDVIDGDLCEQYPSLP
ADMQRKIADELDRTPGEILKKLEDIRNKII
NT seq
3693 nt
NT seq
+upstream
nt +downstream
nt
atgtacctctacagcctgacgctgcagcgcgcgacgggggcggtgtgcgccgtcatcggt
agcttcagcgggcgcgactcgaagaaggcgtccgcctccgtgtccgcctccacgcaggag
atcgccgtcgctcggggcagcacgctcgacctcctccgcactgacccggagaccggccgc
ctccgcacgcttctctccgtcgacgtcttcggcgtcatccgctcgctggcgcagttccgc
ctcaccggcgccaccaaggactacctcgtcgtcggctccgactccggtcgcctcgtcatc
ctcgagtactctcctgaccgcaaccgcctcgacaaggtgcaccaggaaaccttcggcaaa
tccgggtgccgccgcatcgtccccggccagctcctcgcggtcgaccccaagggccgcgcg
ctctgcatcgccgcgctcgagaagcagaagctcgtctacgtcctcaaccgggatgccgcc
gcgcgcctcaccatctcgtccccgctcgaggcgcacaagtccaacacgctcactttctcc
cttgccgctctggattgcggattcgacaaccccatcttctccgccatcgagctcgagtac
gctgagtctgaccgcgaccccacggggcaggctgctaaccaggcgcagaagctcctcacc
ttctacgagcttgatctgggtctcaaccatgtctcccgcaaggcctctgagccgatagat
aatggtgccaatcttcttgtgactgtccctggtggaggtgacggtccgagcggggttctt
gtatgctgtgacaacttcgtgctgtaccgaaaccaggggcacccagagattcgcgctgtt
attccacgccgtgctgacctcccggctgagcgtggtgtcctcatcgttgctgctgctaca
cacagacagaagagtttattcttcttcttactacagactgagtatggtgacatcttcaag
gtcgaccttgaacatagtggtgatactgttagtgagctcaggatcaagtacttcgacacc
atacctgtggcatcggctatctgtgtgctgcgatcgggtttcctctttgccacttctgag
tttggcaaccatgcactttaccaatttcgtgatattggtcgggatgcggatgtcgagtcc
tcgtcagcaacactgatggaaacagaggaggggttccaaccagttttctttcaaccaagg
gcactcaaaaacctcatccgcatagacgagattgagagcctcatgccagtcatggatatg
cgtattgcgaatttatttgatgaggaaacaccccaggtgtttactgcctgtggccgtggt
ccacgctccactctgcgcatcctgaggcctggacttgccatcagtgagatggcccgatca
atgcttcctgccgagcctattgctgtgtggactgtcaagaagaatatcaatgacatgttt
gatgcctacattgttgtgtcttttgctaatgttacacttgtgctttctattggtgagacc
attgaagaagtcagcgacagccagttcctggacaccacacactctcttgcagtcacactc
cttggtgaggactctctgatgcaggtccacccaaatggtataaggcatattagggaggat
ggccgtgtcaatgaatggaggactcctggaaagaaaactattacaaaggttggatcaaac
cggctccaggtggtaatcgccctcagtggtggagagctcatttattttgagatggacatg
acaggtcaactcatggaggtggagaagcaggacatgtctggtgatgttgcatgcctggcc
attgcgccggtccctgaggggaggcaaaggtccagattccttgcagtaggatcctatgat
aacaccattcgtatcctctccctggaccctgatgactgcttacagcctctaagcgtccaa
agtgtctcatcggccccagagtcactcctgttcctggaggtccaggcatcagttggtgtc
gaggatggtgcagagtatcccgccaaccttttcctcaacgctggcttgcagaatggtgtc
cttttccggaccaatgttgacatggtcacaggtcagctgtcagacacacggtctcggttc
cttggtctgagacctccaaagctgttcccctgtagtgttagccaccgccaagcaatgctt
tgcctgtccagccgtccctggctgggctatatccatcaaggtcacttcctcttgacacca
ttgtcctgcgatacacttgaatctgccgcatccttttcttctgatcagtgctcagaaggt
gttgttgctgttgctggagacgcccttcgtattttcaccattgaacgcctaggagagact
ttcaatgaaactgccatcccactgcgctacactccaaggaagtttgtgattctaccaaag
aaaaaatatcttgctgtcattgagagcgataagggtgcattcagcgcagaagagcgagaa
gctgctaaaaaagagtgccttgaggcttctggtgcagtggaaaatggaaatgcgaataac
ggggatcagatggagaatggtgatggtcaagaatatggtgctgaggagggcagcacattt
cctgatgaacagtatggttatccaaaggcagaatcggagaggtgggtttcctgcattagg
atccttgatccaaggagtagggacacgacttgtctgctggaattgcaagacaatgaggca
gctgtcagtatttgcactgtcaatttccatgataaggagcacggtactctcctggctgtt
ggcactgccaaaggattgcagttctggccaaagaggagcctcgctggtgggttcatccac
atatacaagtttgtggatgaagggaggtcactcggacttctacacaagacacaagtggag
gaagtacctcttgcattgtgccagttccagggacggttacttgcaggtgttggttcagtg
ctcagattatatgatctggggaagagaaaattgctcaggaaatgtgaaaacaagcttttt
cccaggacaatagtgtccattcatacctatcgtgataggatctatgttggtgatatgcaa
gagtcatttcattattgcaagtacagacgggatgaaaaccaactgtatatcttcgctgat
gacagtgttcccaggtggcttacagcagcacaacaagtagattttgacactgtggctgga
gcagataagtttgggaatatatattttgctcgtcttcctcaagatatctcggatgagatt
gaagaagacccaactggaggcaagattaagtgggagcaagggaagttaaatggtgcccct
aacaaagttgaggaaattgtgcagtttcacgttggtgatgttgtcacatgtttgcagaag
gcctctttaattcctggtggaggtgaatgtcttatttatgggactgtgatgggcagtgtg
ggagcactgtttgcattcacctccagggaagatgttgacttcttctcacacttggagatg
catctccgtcaggagcatccaccattatgtggaagagatcacatggcttacagatctgct
tattttccagtgaaggatgtgatcgatggtgatctctgtgagcagtatccctccctccca
gctgatatgcagaggaagattgccgatgagcttgacagaactcctggtgaaatcttgaag
aagctagaagacatcaggaacaaaatcatctaa
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