Phragmites australis (common reed): 133918400
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Entry
133918400 CDS
T10575
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH11 isoform X1
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
paua Phragmites australis (common reed)
Pathway
paua03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133918400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paua03019
]
133918400
Enzymes [BR:
paua01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
133918400
Messenger RNA biogenesis [BR:
paua03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
133918400
mRNA degradation factors
3'-5' decay
Ski complex
133918400
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
Helicase_C
Ski2_N
DEXQc_Suv3
ResIII
AAA_22
Motif
Other DBs
NCBI-GeneID:
133918400
NCBI-ProteinID:
XP_062218250
LinkDB
All DBs
Position
5:complement(2789815..2808874)
Genome browser
AA seq
1376 aa
AA seq
DB search
MDGPATTSPASEVPFRITFSGHGGHLRLDPTPHPPSPIPDFVLPPAYPPGSPSSVKEYLE
ANYLNPELYLPTAADGARVWDVDWFDLSRPPLEPSAPRTMLAPAWEPPFRRGRRPSESHV
WDPESVQMEMSEVFDLENGGVAPRMPGPAKDFVRGSVNSRPFRPGGLQGDAAEAAAMQKA
FPEGAQNGDWVHELMSGGPAQVAPPGFRKGLELGQLKEYKSHWKCFRDGELVEEQPASSS
NDTMEKYSVQFDDLFKIAWEEDAVNKVLQEGDVQQSAKDEGTNAFCFQLVEVDEQKVDAL
KDASGTITKLDGEKQEVDAARDVSETETDLDQMLLSEVQDTRRESGGSVDDKTTQDGKVW
ALVGGDEDIVTNFYKLVPDMAIEFPFELDKFQKEAIYYLEKGESVFVAAHTSAGKTVVAE
YAFALATKHCTRAVYTAPIKTISNQKYRDFCGKFDVGLLTGDVSIRPEATCLIMTTEILR
SMLYRGADIIRDIEWVIFDEVHYINDAERGVVWEEVIIMLPKHINIVLLSATVPNTVEFA
DWIGRTKQKKIRVTSTNKRPVPLEHCLFYSGEVYKICERDTFITQGFREAKDAFKKKNSN
KLGVKPGPKSGTPAVRAGIQGRNPDASNRGRDQKYPKHHNANSGAAAVQQSSSGPKRSES
SFWMPLVNNLLKKSLVPVVIFCFSKNRCDKSADSMFGSDLTSNSEKSEIRVFCDKAFSRL
KGSDRNLPQVVGIQSLLRRGIGVHHAGLLPIVKEVVEMLFCHGVIKVLFSTETFAMGVNA
PARTVVFDSLRKFDGKEHRKLLPGEYIQMAGRAGRRGLDNIGTVIIMCRDEIPEESDLKN
LIVGKPTRLESQFRLTYTMILHLLRVEELKVEDMLKRSFAEFHAQKNLPEKEKLLMQMLC
QPTKTIECIKGEPSIEEYYEMALQAEAHREFITEAIMQSPNSQQFLSPGRLVVVKSESDD
DHLLGVVLKNQHAALRRYIVLVLTGDCISSALAPGSFNQIEKEPGDFQQGHFIIPKGKRG
MDDEYFSSVSTRKVSGVINIKLPYKGDASGMGFEVRAIENKEIMSICTGKIKIDQVRLLE
EPSKTAYSKTVQQLIKEQPDGTKYPPALDAIKDLKMKDMYLVESYHAYHRLLQKMSGNKC
HGCIKLKEHISLMREQKKYKDQMNELKYEMSDEALQQMPEFQGRIDVLKVIHYIDSDLVV
QLKGRVACEMNSGEELISTECLFENQLDDLEPEEAVAIMSALVFQQRNASEPSLTPKLAE
AKKRLYDTAIRLGKLQAEFKVPVDPEEYARDNLKFGLVEVVYEWAKGTPFADICELTDVS
EGLIVRTIVRLDETCREFRNAASIMGNSALYKKMEIASNAIKRDIVFAASLYVTGI
NT seq
4131 nt
NT seq
+upstream
nt +downstream
nt
atggacggccctgccaccacctcgccggcgagcgaggtgccgttccgcatcaccttctcc
ggccacggcggccacctccgcctcgaccctacgccgcacccgcccagccctattcccgac
ttcgtcctgccgccggcctaccctccggggagcccgagcagcgtgaaggagtacctcgag
gccaactacctcaaccctgagctctacctccccaccgcggcagatggcgccagggtgtgg
gacgtggactggttcgacctgtccaggccgccgctggagccctcagccccgcgcaccatg
ctcgcgcccgcctgggagccgcctttccggcgcggccggcggccttcggagtcacatgtg
tgggaccctgagtccgtgcagatggagatgagcgaggtgttcgatttggagaacgggggt
gtggcgccgcggatgcctggtccggcgaaggatttcgtcagggggagcgtgaacagcagg
ccgtttcgcccgggtggtctgcaaggtgacgctgccgaggcggctgcgatgcagaaggcg
ttcccggaaggtgcgcagaatggtgattgggtgcatgagcttatgagcggtggtccagcg
caggttgctcctccgggattccgcaagggattggagttgggtcaattgaaggagtataaa
agccactggaagtgtttccgagatggagaacttgtagaggagcaacctgcatcttcatca
aatgacacaatggaaaaatactcggtgcagtttgatgatcttttcaagatagcttgggag
gaagatgctgtcaacaaggtgttgcaggagggtgatgttcaacaatcggctaaagatgag
ggaaccaatgctttttgtttccaattggtagaagttgatgaacaaaaagttgatgcattg
aaagacgcttctgggactataacaaagctagatggtgagaaacaagaagttgatgccgca
agagatgtttccgaaactgaaacagacttggaccaaatgttattgtctgaagtgcaagat
actcgcagagaatcaggtggatctgttgatgacaaaacgacacaggatggcaaggtttgg
gcacttgttggcggggacgaagacattgtgactaacttctacaaactcgttcccgatatg
gccattgagtttccatttgaattagataagttccagaaggaggctatatattatcttgag
aagggtgaatcagtcttcgtggcagcccatacttcagcaggaaagacagttgttgcagag
tatgcattcgctttagcaacaaaacattgcaccagggctgtctatactgctcctattaaa
actatcagcaaccagaaataccgagatttctgtgggaagtttgatgtgggacttctgaca
ggagatgtcagcatcaggccagaggcaacttgcttaattatgacaactgaaatattgcgc
tcaatgctttacagaggtgcggacattatacgtgatatcgaatgggtaatcttcgatgaa
gtgcattatataaatgacgccgaaagaggtgtagtttgggaggaagttattataatgctc
ccgaagcacattaacattgttcttctttcggcaacggtcccaaataccgttgaatttgct
gactggattggtcgaacaaagcagaagaaaattcgtgtcacatcgaccaacaaaaggcct
gttcctcttgagcattgcttgttctactctggagaggtgtacaaaatatgcgagagggac
acctttattactcaaggatttagagaagcaaaagatgctttcaaaaagaaaaattcgaac
aagcttggagtgaaacctggtccaaaatcaggaacccctgcagtacgtgctggaattcaa
ggcagaaatccagatgcatctaacaggggaagagatcagaaatacccaaagcaccacaat
gccaattcaggagcagcagcagttcaacaaagttcctcagggccaaagagatcagagtct
tcattttggatgccacttgtaaataaccttctgaagaaatcccttgtgcctgtggtgatt
ttttgtttctcaaagaaccgctgtgataaatcagcagatagcatgtttggctctgatctc
accagtaattcggagaaaagtgaaatccgtgtcttctgtgacaaggccttctcacgcctt
aaaggatctgataggaaccttccacaggttgtagggatacaaagccttctgcgaagagga
attggagtgcaccatgctgggcttctccctattgtgaaggaagtagttgagatgctattc
tgtcatggtgtgatcaaggtactgttttccacggagacatttgcaatgggtgttaatgca
ccagcaagaacggttgtgtttgattctttaagaaagttcgatggaaaagaacaccgaaaa
ttgcttccaggagagtatattcaaatggctggacgagctggcaggagaggacttgataac
attggcacagtgatcattatgtgtcgtgatgaaattcctgaagaaagtgatttgaaaaat
ttgattgttggaaaaccaactcgattggaatctcaatttcgattaacatacactatgata
ctacatcttctacgtgtggaggaactgaaggttgaggatatgctgaagagaagttttgcc
gaattccatgcacaaaagaatttgcctgagaaggaaaagctacttatgcaaatgctttgt
caacctacaaagacaatagagtgcataaaaggagagccttctatcgaagaatactacgag
atggctttacaagctgaggcacatagggaatttatcacagaggcaattatgcagtcaccc
aattctcaacagtttctttcgcctggaagactggtggttgttaaatctgaatcagatgat
gatcatttgcttggcgtagtactgaaaaatcaacatgcagcactaaggcgatacattgtt
cttgtactgaccggtgattgcatttcatctgcactagcccctggttcgttcaatcaaatt
gaaaaggaacctggggattttcaacaaggacactttattatcccgaaaggaaaacgtggc
atggacgacgaatatttctcttctgtcagcacacgaaaagtttcaggtgttatcaatatc
aagctaccatacaagggggatgcatctggaatgggttttgaagtaagagcaatagagaac
aaagagataatgagtatatgcactggcaaaataaagattgatcaagtcagactcctcgag
gagcctagcaaaactgcttactctaaaactgtccaacagcttataaaagagcaaccggat
ggaactaagtatcctcctgctttagatgcaataaaagatctaaaaatgaaagacatgtat
cttgttgaaagctaccatgcatatcacagactactgcaaaaaatgtctggaaacaagtgc
catggttgtataaagctaaaggagcatatatcattgatgagggagcaaaagaagtacaag
gatcagatgaatgaattgaaatatgaaatgtcagatgaggcgcttcaacagatgccagag
tttcaaggcagaattgatgtactgaaggtgatccactatattgattctgatctggttgtg
caactcaagggtcgagtagcctgtgaaatgaactctggtgaggagttaatatcaacagaa
tgtctgtttgagaatcaattggatgacctcgaacctgaagaagccgtggctattatgtct
gcattagttttccaacagcggaatgcatcagaaccatctcttacgccaaaattggctgaa
gccaaaaagaggctctacgatacagcaatcagattaggaaagctacaagcagagttcaag
gtgcctgtggatccggaggagtatgcacgtgataatctcaagtttggccttgttgaggtt
gtctacgagtgggcgaagggaacacctttcgcggacatatgtgagctgacggatgtatct
gaagggctcattgtaagaacaatcgttcggttggatgaaacatgcagagaattcaggaat
gcagcttccataatggggaactctgcgttgtacaagaagatggagattgcgtctaatgct
attaagcgtgacattgtgtttgcggcaagcctgtatgtcacaggaatttga
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integrated database retrieval system
