Phragmites australis (common reed): 133918764
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Entry
133918764 CDS
T10575
Name
(RefSeq) U1 small nuclear ribonucleoprotein C-1-like
KO
K11095
U1 small nuclear ribonucleoprotein C
Organism
paua Phragmites australis (common reed)
Pathway
paua03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133918764
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
paua03041
]
133918764
Spliceosome [BR:
paua03041
]
Complex A
U1 snRNP components
U1 snRNP specific factors
133918764
Complex B
133918764
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-U1
CLIP1_ZNF
Motif
Other DBs
NCBI-GeneID:
133918764
NCBI-ProteinID:
XP_062218798
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All DBs
Position
5:complement(11754103..11757670)
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AA seq
229 aa
AA seq
DB search
MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRNYYQQFEEQQTQSLIDQRIKEHLGQ
AAAFQVGAPFNQHILSFPGGVPRPRLPILPTPMMPHGVPQAPGALLMPGVRPPILPAPGV
PGYPGAPPNMPQPGAPPGSMPMQMAPLPRPPTLQPPTSGAPVAPIPNSGAPPSMYQTNPP
PAGPTSGAPPAMYQTNPPPPAGPTSGAPPAPPTAPQPAFSYAQPSEGTH
NT seq
690 nt
NT seq
+upstream
nt +downstream
nt
atgcctcggtattattgtgactactgcgacacctacctgacccatgactcgccatctgtc
cgtaagcaacacaacgcgggatacaaacataaggcaaatgttcgaaactactatcagcaa
tttgaggagcagcaaactcaaagtttaattgatcaaagaatcaaggaacatctgggacaa
gctgcagctttccaagttggtgcccctttcaaccaacatattctctcattcccaggaggc
gtgcctcgtcctcgtcttccgattctacccacacccatgatgccacatggtgtccctcaa
gcacctggtgcactgctgatgccaggagtaaggcctcctattttaccagctcctggtgtt
ccaggttatcctggtgctccaccaaacatgccgcaaccaggcgccccacctggttccatg
cctatgcagatggcacctctcccaaggcctccgacactacaacctccaacatctggagcc
ccagtcgccccaattcccaacagcggggcacctccatccatgtaccaaacaaatccacca
cctgcaggcccaacttctggggcacctccagccatgtaccaaacaaatccaccgccacct
gcaggcccaacttctggtgctcctccggctccaccgactgctccacagcctgcattttcc
tacgcacaaccatctgaaggcacccactga
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