KEGG   Phragmites australis (common reed): 133918985
Entry
133918985         CDS       T10575                                 
Name
(RefSeq) DNA polymerase epsilon catalytic subunit A-like
  KO
K02324  DNA polymerase epsilon subunit 1 [EC:2.7.7.7]
Organism
paua  Phragmites australis (common reed)
Pathway
paua03030  DNA replication
paua03410  Base excision repair
paua03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:paua00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    133918985
   03410 Base excision repair
    133918985
   03420 Nucleotide excision repair
    133918985
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:paua03032]
    133918985
   03400 DNA repair and recombination proteins [BR:paua03400]
    133918985
Enzymes [BR:paua01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     133918985
DNA replication proteins [BR:paua03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   DNA polymerase epsilon complex
    133918985
DNA repair and recombination proteins [BR:paua03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     DNA polymerase epsilon complex
      133918985
SSDB
Motif
Pfam: DUF1744 POL2_thumb DNA_pol_B_exo1 DNA_pol_B zf-DPOE zf_DPOE_2 DNA_pol_B_exo2 RNase_H_2 YbjQ_2 bHLH_INO2
Other DBs
NCBI-GeneID: 133918985
NCBI-ProteinID: XP_062219147
LinkDB
Position
5:24226618..24264015
AA seq 2216 aa
MSGGDGRRRRPSAGGGGGGFGGGGGGGWRRNGSSVAKEQRLRLGAEELLESRLGFAPYTD
GERRLGWLLTFSPSSWEDEDTGKIYSCVDLYFVSQDGSTFKVKYKFRPYFYAATKDKMEL
EVEAYIRRRYEGEISDIEIIEKEDLDLKNHLSGLKRKYLKLQFDAVQQLMRVRNDLLHVV
EKNEEELDAAEAFETIHGVKRVERTQDYINCIIDLREYDVPYHVRFAIDNDVRCGQWYNV
SVSGSDVLLQRREDLLQRAEVHVCAFDIETTKLPLKFPDAEYDNVMMISYMIDGQGYLII
NRECVGEDIEDLEYTPKPEFEGYFRVKNVPTELDLLKAWFSHMQEVKPGIYVTYNGDFFD
WPFLEKRAAHHGIKMNEEIGFQCDNNQGECRAKFSCHLDCFAWVKRDSYLPQGSQGLKAV
TKAKLGYDPLEVNPEDMVRFAMEQPQTMASYSVSDAVATYYLYMTYVHPFIFSLATIIPM
SPDEVLRKGSGTLCEMLLMVQAFKAHIICPNKHQADLEKFYNNRLLESETYIGGHVECLE
TGVFRSDLPTKFQLEPSAYEQLIGNLDRDLQYAIAVEGKLDIDSVTNYDEVKDAIKQKLV
SLRDNPIREERPLIYHLDVAAMYPNIILTNRLQPPSIVTDVDCTACDFNRPGKNCLRKLE
WVWRGATYMAKKNDYYHIKRQIESELIQSGGTISSKPFLDLSKPEHLLKLKDRLKKYCQK
AHKRVVDKPITEVREAGICMRENSFYVDTVRSFRDRRYEYKGLNKTWKGKLAEEKASGNS
IKIQEAQDLVVLYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARL
LVEKIGRPLELDTDGVWCVLPGSFPENFTFKTKAGKKLTISYPCVMLNVDVARNNTNDQY
QTLKDPVNKLYTTHSECSIEFEVDGPYKAMILPASKEEGILIKKRYAVFNEDGTLAELKG
FEIKRRGELKLIKVFQAEVFDKFLHGATLEECYAAVASVANRWLDLLDNQGIDIADSELL
DFISESSTMSKSLVDYGEQKSCAVTTAKRLAEFLGDSMVKDKGLHCQYIVAREPQGTPVS
ERAVPVAIFETDSEIAKHYLRKWCRISSDASIRSIVDWSYYKQRLSSAIQKIITIPAAMQ
KISNPVPRVLHPDWLHKKVREKDDRFRQRKLRDIFSPLAKDEGMQNLNGIGDMEDLLMSN
KDLRNIPASNGLNIDKENNPNGPSVEAGSDYSKNRQKSLTGSNVPLSSQIQNDASDETVD
RSMDYQGWLDTKKRKWKHVREQKKRRRLGVAATFDSPTNTLFSVRNVNQSQGNSRNRSTF
FQKQELALIRSHWQIIQLASSTIPGRFFAWVVTEGIMFKVPINVPRVFYLNSKAPVTEEF
PGRRVKKILPHGRPCFNLIEVVTSEEQFRAEGKKVAAHLAEPDVEGIYETKIPLELNAVL
QIGCVCKVDKSVKKRSIQDGWDLAELQMKTTAECSYLEQTVSFFYLYHSLSEGRAVYVLY
FPTSFRIYAVVVNPFRNKELSPSFLEKQFRDASQALGPVPENLTFNVDYQTSIDAGSKYV
QRMLLEYRQQHPGPVISIIECPKLQDIKAAVRALDDFPCVTIPCNARDNNYQALGWQATA
GRTSMQRCAASTQWFNERISLARYAHVPLGNFELDWLLFTADVFFSRALRDQQQVLWISD
DGIPDLGGTYEGDTCFADEVIQPALTYPGAYRRISVELKIHHLAVNSLLKSSQVDEMDGG
SIGCFGSDMAPGPHAAETDFDDPSLCAPAFQVLKQLIQRCISDAVSSGNAFADAILQHLY
RWLCSPRSKLHNPALHRLLHNVMKKVFALMLAELRKLGANVIFANFSKIIIDTGKVDLSS
AHAYCNSLLKTLQTRDLFEWIELEPLHYWHSLLFMDQYNYGGIQAKTLDADCSDGDNGID
IVSSWNIAEYLPKATQDHFVLIVSEFLYIPWKYMKEEVARTATIRDDTSCTPSITVMAAE
NLEGQVIGYLCDKISTYFADKLLKIVSDILHHFKGKSKFESDEPANRESNPHTHKGGAAL
EFIKHICAVLALDQNVQHDILRMRKNLLKLVRVKEFAPEAQFQDPCASFTLPNVICSYCN
DCRDLDLCRDSALQGQEWRCAVPQCGQPYHREQMKNALLQVVRQRERLYHLQDLVCVRCR
QVKAAHLSEQCSCGGSFRCKEESSYFLSKMRVFLNVAASQKFHLLQDCVQWILEVR
NT seq 6651 nt   +upstreamnt  +downstreamnt
atgagcggtggagacgggcggcggcggcggccgtcggccggaggaggagggggagggttt
gggggaggaggcggcggcggctggcggaggaatgggtcgtcggtggcgaaggagcagcgg
ctgcggctgggggcggaggagctcctcgagagccgccttggcttcgcgccctacaccgac
ggggaacgccgcctcgggtggctcctcaccttctccccctcatcatgggaagacgaggac
actgggaaaatctacagctgtgttgacctatactttgtgtcacaggatggttctacattc
aaagtgaaatacaagtttcggccttacttttatgctgcgactaaggacaaaatggagttg
gaagttgaggcgtatattaggcgacgttatgaaggggaaatttctgacatagaaataatt
gagaaagaggatctagatcttaaaaaccacctttcgggcttgaagagaaaatatttgaag
cttcagtttgatgccgtacagcaattaatgcgtgtaaggaatgacctattacatgttgtc
gaaaagaatgaagaagaactagatgctgcggaggcatttgaaacaattcatggtgtaaaa
agggtagaaaggacacaagattacataaactgcatcatcgatttgcgtgaatacgatgtt
ccatatcatgttcgttttgctattgataatgatgtgagatgtggacagtggtacaatgtt
agcgtatctggttctgatgttttgcttcagagaagggaagatcttcttcagcgcgcagaa
gttcatgtatgtgcttttgatattgagaccacaaagctgcctctgaagtttccagatgct
gaatacgacaatgtaatgatgatttcgtacatgattgatgggcaagggtacctgataatc
aacagagagtgtgtaggggaagatattgaagatttggagtacacacccaaaccagaattt
gaggggtattttagagttaagaatgttccaactgagttggatctacttaaagcttggttt
tctcatatgcaagaggttaagcctggtatttatgttacatacaacggtgacttttttgac
tggccatttttggagaagagggctgctcaccatgggataaaaatgaacgaggagattggt
ttccaatgtgacaataatcagggggagtgccgggctaaattttcttgccaccttgactgt
tttgcctgggtgaagcgagacagttaccttccacaaggaagccagggtctaaaggctgtt
acaaaagccaagctaggttatgatcccctggaggttaatccagaagatatggttcgcttt
gcaatggagcagccacagacaatggcttcttattctgtgtcagatgctgttgcaacgtac
tatctgtacatgacttatgtccatccatttatcttttctctcgcaaccattatacctatg
tcacctgatgaggtattgcggaaaggaagtgggacactttgtgaaatgctactaatggtc
caggcattcaaggctcatatcatttgtcctaacaaacaccaagctgacctggagaagttc
tacaataaccgtcttttagaaagtgaaacctacatcggtggtcatgttgagtgtcttgaa
actggagtatttagatctgatcttcccacaaagttccaacttgaaccatcagcatatgag
caactgattggaaatcttgatcgtgatctgcaatatgccattgctgtagaaggaaaattg
gatattgattctgtcacaaattatgatgaagtcaaggatgccataaagcaaaagcttgtt
tcattgcgagataacccaattcgtgaagaacgtcctcttatatatcatctggatgttgct
gcaatgtatccaaatatcattttgacaaataggctccagccgccatccatagttacagat
gtggactgcacagcatgcgatttcaatcgtcctggaaagaattgcctcagaaagcttgaa
tgggtttggcgaggagcgacctacatggcaaaaaagaatgactattatcacataaagagg
caaattgagtcagaactgattcaatctggtggcacgatatcgtcaaagccttttcttgac
ctctcaaaaccagaacatttactaaaactgaaggatcgtttgaagaaatactgccaaaag
gcacataaaagagtagttgataaaccaattacagaagttagagaagctggaatatgcatg
cgtgaaaattctttctatgtagacacagtacgaagctttcgcgatagaaggtatgaatac
aaaggtcttaacaaaacatggaaaggaaaattggcagaagaaaaagccagtggcaattct
atcaaaattcaggaagcgcaggacttggttgttctatatgattcgttgcaacttgctcac
aagtgcattttgaattctttttatggatatgttatgcgcaagggtgcaagatggtactct
atggaaatggctggtgttgtgacatatactggtgcgaagattatccaaaacgctcgacta
cttgtagaaaaaattggaaggccactggaactggatacagatggcgtttggtgtgttttg
cctggttcttttccagagaactttacttttaagacaaaagctgggaagaagcttacaata
tcttatccctgcgtgatgcttaatgttgatgttgcaaggaacaacactaatgatcaatat
caaacactaaaagatccagtaaataagctatatacaacacacagtgagtgttccattgaa
tttgaggtagatggaccttacaaggccatgatcctacctgcctctaaagaggaagggatt
ctgataaagaagaggtatgctgtctttaatgaagatggtaccttggcagaacttaaaggt
tttgagatcaagcgtagaggtgagctgaagctcatcaaagtttttcaggcagaggtattt
gacaaatttctccatggtgcaactttagaggaatgctatgctgctgttgcctctgttgct
aaccgttggttggacctactggacaatcaagggattgatattgcggacagtgagttgctt
gatttcatatcagagtcaagcacaatgagtaaatccctagttgactatggagagcagaag
tcatgtgctgtaactacagcaaaaagacttgctgaatttcttggtgattcaatggttaaa
gacaaaggactgcattgccaatacatcgttgcccgagagccacaaggaactccagtgagc
gagcgagctgttcctgtagctatatttgagacagattctgagattgcaaagcattattta
aggaaatggtgcagaatctcctctgatgcaagcatccgatctattgttgattggtcttac
tacaagcaacgtttaagctcagctatccagaaaatcataacaattcctgcagcaatgcaa
aagatctcaaaccctgttcctcgagttcttcatcctgattggttacacaaaaaggtcaga
gagaaagatgatcgatttcgccagcgtaaattacgtgatatcttcagtcccttggccaaa
gatgaggggatgcagaacttgaatgggattggagatatggaagatttattaatgtcaaac
aaggatttgagaaacattcctgcatccaatggtttgaacattgacaaagaaaataatcca
aatgggccatcagtggaagctggttcagattatagtaaaaacaggcaaaaatctctaact
gggtcaaatgtgccactctcttcacaaatccaaaatgatgccagtgatgaaacagttgat
agaagtatggattatcaaggatggcttgacactaagaagagaaaatggaaacatgttcgc
gaacaaaaaaagcgtcgaaggttgggtgttgctgccacttttgacagtcctactaataca
ttgttttctgtgagaaatgtcaatcagtcacaaggaaacagcaggaaccgatctacattt
ttccagaaacaagaattggccctcattagatcacattggcagataatccagcttgcttca
agtacaatacctggccgcttttttgcatgggttgtcactgagggaatcatgttcaaggtt
cctatcaatgtgcctagagttttttatctaaactcgaaggctcctgtcacagaagagttt
ccaggaaggcgtgtgaaaaagattcttcctcatggaagaccttgtttcaatctgattgag
gttgtaactagtgaagaacagttcagggctgaaggcaaaaaagttgctgctcatctagca
gaaccagatgttgagggaatatatgagacaaaaattccactggagctcaatgctgttctc
caaattggctgtgtatgcaaagtggacaagtctgtaaaaaaacgaagtatacaagatgga
tgggatcttgctgaattgcaaatgaaaacaaccgcagagtgctcatacctggaacaaaca
gtttcatttttctatttatatcacagcttgtctgaaggaagggctgtatatgtcttgtac
ttccctacatctttcagaatatatgctgtggttgtcaatcctttccgtaacaaagaacta
tcaccttcatttcttgaaaagcaatttcgagatgcttcccaagctctcggccctgtgcct
gagaatctcacctttaatgtggattaccaaacatcaattgatgcaggtagcaaatacgtg
caaagaatgttacttgagtacagacaacaacatcctggacctgtcataagcatcatagaa
tgccctaaactccaagatataaaggcagctgtacgagcacttgatgatttcccatgtgta
accattccttgtaatgcacgggacaacaactatcaggctcttggttggcaagcaacagct
ggtcgaacaagcatgcagcgttgtgctgcatcaacccagtggttcaatgaacgaatttca
cttgcaagatatgcgcatgtgccattgggaaattttgaactagattggcttctttttact
gccgatgtgttcttttcaagggcattgcgtgaccaacagcaggtactatggatatctgat
gatggtattcccgatttgggaggcacttacgaaggagacacatgctttgctgatgaggtc
attcagcctgcgcttacttatcctggtgcatatagaaggatttctgttgagctgaagatc
catcatttggcggttaattctctcctgaagagcagtcaagtggatgaaatggacggagga
tccatcggttgctttggaagcgacatggctcctggtccacatgccgctgaaactgacttc
gatgatcctagcttatgtgcacctgctttccaggtgctaaagcaactcattcagagatgc
atttcagatgcagtgtcgtctggaaatgcatttgctgatgcaatattgcaacatctctac
cgttggctttgcagcccacggtcgaaacttcataacccagctctccatcgccttcttcat
aatgtcatgaagaaggtctttgctctaatgttggctgagttacgaaagcttggagctaat
gttatctttgcaaacttttctaagataatcatagatactggaaaagtggatttgtcatca
gcacatgcatattgtaatagcttattaaagaccttacagacaagggacctttttgagtgg
atagagctggaacctttgcattattggcattccttattgttcatggatcagtataactat
ggtggcattcaggctaaaacactagatgcggactgttcagatggtgataatggtattgac
atagtctcaagctggaacatagcagaatacttgcctaaagctacacaggatcactttgtc
ttaatcgtctcagagttcctatatattccatggaaatacatgaaagaagaagtagctagg
acagcaactataagggatgatacctcatgcactccatctataacagtcatggctgctgag
aaccttgagggccaggtcataggatacctctgtgacaagatcagcacttactttgcagac
aagcttctaaaaattgtaagtgatatacttcaccatttcaaagggaaaagcaagtttgaa
tcagatgaacctgcaaatagagaatccaatcctcacacacataaagggggtgctgcactg
gagttcattaagcatatatgtgctgttcttgctcttgatcagaatgttcagcatgatatt
ctgagaatgaggaagaacttgttaaagttggttcgtgtcaaggagtttgccccagaagca
caattccaagacccatgcgcctcattcactctcccaaatgtgatttgcagctactgcaac
gactgccgggatcttgatctctgtcgtgattcagcactccaaggtcaggagtggaggtgc
gcagtgccgcagtgtgggcagccataccaccgtgagcagatgaaaaatgcacttctacag
gtggtccgccagcgagagaggctgtaccacttgcaggatctggtctgcgtccgctgcagg
caagtaaaagccgcccatttatctgagcagtgctcctgtggaggctcattccggtgcaag
gaggaatcatcatattttctcagcaaaatgcgcgtattcctgaacgtcgcggccagccaa
aaattccatctcctacaagattgcgtgcaatggattcttgaagtcagatga

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