KEGG   Phragmites australis (common reed): 133919017
Entry
133919017         CDS       T10575                                 
Name
(RefSeq) DNA repair protein RAD5A isoform X1
  KO
K15505  DNA repair protein RAD5 [EC:5.6.2.-]
Organism
paua  Phragmites australis (common reed)
Brite
KEGG Orthology (KO) [BR:paua00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:paua03400]
    133919017
DNA repair and recombination proteins [BR:paua03400]
 Eukaryotic type
  TLS (translesion DNA synthesis) factors
   Rad6 epistasis group
    133919017
SSDB
Motif
Pfam: SNF2-rel_dom UBA_RAD5A Helicase_C HIRAN zf-RING_UBOX zf-C3HC4 zf-C3HC4_3 zf-C3HC4_2 zf-RING_2 zf-C3HC4_4 Prok-RING_4 zf-RING_5 DEAD RING_XB3-XBAT31 zf-ANAPC11 zf-RING_4 zf-Nse
Other DBs
NCBI-GeneID: 133919017
NCBI-ProteinID: XP_062219182
LinkDB
Position
5:25702166..25709789
AA seq 1022 aa
MGKEREREEQVAMVRAVLGEGTPEMDIIRALHMAGDDPTKAINILLDFLQKPPPSPSPSP
SPPPAKPAKTLTESTPPSSVPTHPKPTAEKPKPAPAPATTNGGGEHWWLVGSAEMAGLAT
CKGRRIAPGDAVTFSFPNATAAAAAAGKSRPGRPGLASCSSGIMRFSTPNHGEVGRIPNE
WARCLLPLLKENKIKVQGSCKSAPEALSIMDAVLLSVCVYINSSMFHDQKQSTPKAARVA
PEDSTFHPLPALFKLIGLAPFKKAAFTPEDLYSRKRPIETKSSIGVPATKLTSEKLRLSS
GGNEDDQDEETVSDSDLDDLIGITDSSALEERAPPDSLQCDLRSYQKQALHWMLQLEKGS
SYQDAATTLHPCWEAYKLEDKRELVLYLNVFSGDATTEFPSTLQLGRGGILADAMGLGKT
IMTIALLLSDSGKGCITTHHTTQICGEARGLGELPTHSHDAVKKLASPFSFSKLRKHKAP
LIGGGNLIVCPMTLLGQWKAEIEAHTKPGIVNIYVHYGQNRPKEAGFVGQSDIVLTTYGV
VASEFSTDGSIENGPLYSVNWFRVVLDEAHMIKSSRSLISLAAASLTADRRWCLTGTPIQ
NNLEDLYSLFRFLRVEPWRNWALWHKLVQKPYEEGDERGLKLVQSILKPIMLRRTKNSTD
KEGRPIVTLPPANIEVKYCDLSEAEKDFYEALFRKSKVKFDQFVEQGRVLHNYASILELL
LRLRQCCDHPFLVLSRGDTQEFADLNKLVKRFLHGGNGAVNGDSSCLPSRAYIEEVVQEL
QKGEGECPICLEAFEDAVLTSCAHRLCRECLLSSWRSATAGLCPVCRRSMSKQDLITAPT
DSRFQVDVDKNWVESSKISALLLELEALRSSGAKSIVFSQWTAFLDLLQIPLLRNNFSFA
RLDGTLNHHQREKVIKEFSENKSILVLLMSLKAGGVGINLTAASNAFVMDPWWNPAVEEQ
AVMRIHRIGQTKTVSIKRFIVKGTVEERMEAVQARKQRMISGALTDQEVRTARIEELKML
FS
NT seq 3069 nt   +upstreamnt  +downstreamnt
atggggaaggagcgggagcgggaggagcaggtggccatggtgcgcgcggtgctcggcgag
ggcacgccggagatggatatcatccgcgcgctccacatggctggcgatgaccccaccaag
gccatcaacatcctcctcgacttcctccagaagccaccgccatcgccgtcgccctccccc
tccccaccgcctgccaaacctgccaaaaccctcaccgagtcaaccccaccgagcagtgtc
cctacgcatcccaagcccacggcagagaaacctaagcccgcgcctgcgcccgcgacaacc
aacggcggcggtgagcactggtggttggtggggagcgccgagatggcggggttggccacc
tgcaagggcagacgaattgcccctggggacgcggtcaccttctccttccccaacgccacg
gctgccgccgccgcggcgggcaagagccgtcccggccgccccggccttgcttcctgctcc
tccgggatcatgcgcttctccaccccgaaccacggggaggtgggtcgcatccccaatgag
tgggcacggtgcctccttccccttctcaaggagaacaagataaaagtccagggctcgtgc
aaatcagctcctgaggcgcttagcattatggacgccgtcctcttatccgtgtgtgtatat
atcaacagctcaatgtttcacgatcaaaagcaatcgacgcccaaagccgctcgggttgct
cctgaggattccacatttcacccactacctgcactttttaagttgattgggcttgcccct
tttaaaaaggccgcatttactccagaagatctttattccaggaagcgaccgattgaaaca
aagagcagtatcggagtgcctgccactaagttgacatccgagaaattgagattatcttct
ggtggaaatgaagatgatcaggatgaagaaactgtttcagattcagatttggatgatcta
attggaatcactgacagttctgcactggaggaaagggctccccctgattctctgcagtgc
gatctacgctcttatcaaaagcaggcccttcattggatgctgcaacttgagaaaggaagt
tcttaccaggatgcagctacaacccttcacccttgttgggaagcatataaactcgaggac
aagagggaactagttttgtacttgaatgtgttttcaggcgatgccacaactgagttccct
agtacattacaacttggcagaggagggattctggcagatgcaatgggattggggaagact
attatgactattgctcttcttctttctgattctggcaaaggatgcatcactactcaccat
accactcagatctgtggagaagctagagggttgggtgaattgcctactcattctcatgat
gctgtgaagaagcttgctagccctttctcttttagtaagcttagaaaacataaggctcca
cttattggaggtggcaatctaatcgtctgcccaatgactctacttggtcagtggaaggcg
gagattgaagctcatactaagccgggcattgtgaatatatatgttcattatggacaaaac
agaccaaaagaagcaggttttgtcggtcagagtgatattgtcctgactacatatggtgtc
gtggcatcagaattttcaactgatggttcaatagaaaatggtcctctctactctgtaaat
tggttcagagttgtgcttgatgaagcacacatgataaagtcttctagaagtttgatatcc
ctagctgctgcttctctgacagctgatcggcgctggtgtctcaccggtacaccaattcag
aacaacttggaggatctgtacagcctttttcggtttttgagagttgaaccatggaggaac
tgggccttgtggcataaacttgtacaaaaaccatacgaagaaggtgatgaaagaggctta
aagctagtgcagtctattttaaagccaataatgttgagaaggactaaaaatagcacagac
aaggagggcagaccgatcgttactttaccccctgcgaatattgaagtaaaatattgtgat
ttgtcagaggctgagaaggatttctatgaagctctatttcgaaaatctaaggtaaaattt
gatcaatttgtggagcaaggaagggtcttgcacaactatgcttcaattttggagttactt
ttgcgccttcggcaatgctgtgaccatccgttccttgttctgagtcgtggggatacacag
gagtttgcagacctaaacaagcttgtgaagcgtttcctgcatggtggtaatggtgccgtt
aatggggattcttcttgcctcccctctagagcttacattgaagaggttgtccaagaactg
cagaaaggtgaaggggagtgccctatttgcctagaagcctttgaggatgctgtattaact
tcctgtgcccaccgtttatgccgagagtgtctgttgtctagttggcgaagtgcaacagca
ggtctttgtcctgtctgtagaaggtcaatgagcaaacaagatctcataactgctccaact
gatagccgctttcaagttgatgtcgataaaaactgggttgaatcttccaagatatctgct
ctcctgctggagttagaagctcttcgcagttcaggtgccaagagcatcgtgtttagccag
tggactgcatttttagatctcttgcaaattccacttttgagaaataacttctcatttgct
aggctggatgggacgttgaatcatcaccagagagagaaagtaatcaaggagttctcggag
aacaaaagcattttggttctacttatgtctctgaaggctggtggtgttggtataaacctt
actgctgcatctaatgcatttgtcatggacccttggtggaatcctgctgtcgaagaacaa
gctgtaatgcgcatccatcgaattggtcaaacaaagactgtttctatcaaaagattcatt
gtgaagggcactgttgaagaacgaatggaagccgtgcaggcccgtaagcagcgaatgatt
tctggagcgttgacagatcaagaagtccgcaccgcacgtatagaagaactgaagatgctt
ttctcttga

DBGET integrated database retrieval system