Phragmites australis (common reed): 133919397
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Entry
133919397 CDS
T10575
Name
(RefSeq) RNA polymerase II C-terminal domain phosphatase-like 1 isoform X1
KO
K18998
RNA polymerase II C-terminal domain phosphatase-like 1/2 [EC:
3.1.3.16
]
Organism
paua Phragmites australis (common reed)
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
paua01009
]
133919397
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
paua03021
]
133919397
Enzymes [BR:
paua01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.3 Phosphoric-monoester hydrolases
3.1.3.16 protein-serine/threonine phosphatase
133919397
Protein phosphatases and associated proteins [BR:
paua01009
]
HAD phosphatases
Fcp/Scp phosphatases
133919397
Transcription machinery [BR:
paua03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
133919397
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
dsrm
NIF
DSRM_2
Motif
Other DBs
NCBI-GeneID:
133919397
NCBI-ProteinID:
XP_062219758
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All DBs
Position
5:34769562..34781591
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AA seq
936 aa
AA seq
DB search
MFKSMVYYGNTSIGEVEVWPKGEASAGLTVASWAREIRVDRLSPPSERCPPLAVMHTVAV
GARCLVMESRPPAAADVAPLPLVAMHTACLRDNKTAVVPLGDEELHLVAMTSRRNLTNHA
CFWGYKLPFGLYNSCLTMLNLRCLGIVFDLDETLIVANTSRSFEDRIDALQRKLSNETDP
QRTSGMLSEIKRYQDDKSILKQYIEGDQVNDDGKLYKAQPEVVPPLSDNHQPMTRPVIRL
QEKNIILTRINPLIRDTSVLVRLRPAWEDLCSYLIARGRKRFEVFVCTMAERDYALEMWR
LLDPDSRLINSVQLHDRMVCVKSGLRKSLLNVFHDGSCHPGMALVIDDRLKVWDEKDQSR
VHVVPAFTPYYAPQAEANCSIPVLCVARNVACNVRGGFFKDFDEGLLPRISNVLYEDEIN
GIPSAPDVSNYLITEDENVAVVNGNRDLLPFDGMADAEVERRMKEASVNAQAFHPTVASF
VMPVAPAQNFVSSSVAPLAPPIGMVPPSFNQPVAQPVFSDPLQGSPAREEGEVPESELDP
DTRRRLLILQHGQDTRDPTPPLPVIPPVQVHVPPVQPHGNWFPTEDGMNPSNLNRSSAAF
SLESDTMLYEKKQPHHPSFFHGGDNPVPSDRFSYQNQRFPSQLPHTEDHRMLQNHAPPKY
RSFSGEELAVRHVPSSQRNNQIESGRHFAQYAPSAGILEDIALKCGSKVEYRSTLCDTAE
LQFSIEVWIVGEKVGEGIGRTRKEALRQAAEFSLRNLANKYLSSDPNKMTDMKENGFGSN
WNFFGYSGTTRDDMLPVSSTSEESRFLKMEETNSRKTGGSVAALKELCTVEGYNLVFQAC
PSHPDGSVGKESYAQVEVGGQILGKGVGITWEEAKLQAADEALGTLRSMLGQLGQKWSGS
PRSLAPNFNKRFKPDFPRTLQRVPYGTYSRIEGHVP
NT seq
2811 nt
NT seq
+upstream
nt +downstream
nt
atgttcaagtcgatggtttattacgggaacacctcgatcggggaggtggaggtgtggccc
aagggcgaggcgagcgcgggcctgaccgtggcgtcttgggcgcgagagatccgcgttgac
cgcctttccccgcccagcgagcggtgtccgccgctcgccgtcatgcacaccgtggccgtc
ggcgcccgatgcctcgtcatggagtccaggccgcccgccgctgccgacgtggcgccgctg
ccgctcgtcgccatgcacaccgcttgcctcagggacaacaagactgcagttgttccactt
ggagatgaagaattgcatttagttgcaatgacgtccagaagaaacttgacaaatcatgct
tgtttctggggctataaattgccatttggcttgtataattcttgcttgaccatgttaaat
ctccggtgcctgggtatcgtgtttgaccttgatgagacattgattgtcgccaatacatca
cggtcttttgaggacagaattgacgcgcttcaaagaaagctgagtaatgagactgatcca
cagcgcacgagtggaatgttatcagaaatcaagaggtaccaagatgataagtccatccta
aagcaatatatagaaggtgatcaagtcaatgatgatggaaaattgtataaagcgcagcct
gaggttgttccaccactgtctgataaccatcaaccaatgacacgtccagttataagatta
caagagaaaaacattatcttgacaagaataaatcctctgataagggataccagcgttctt
gtacggttaaggccagcctgggaggatctttgcagctacttaattgcaagaggtcgcaag
cgttttgaagtctttgtgtgcacgatggctgagagagactatgctttagaaatgtggagg
ttacttgatccagattcaagattaattaactctgttcaacttcatgatcgaatggtgtgt
gtaaaatctggtttaaggaagtccttgctaaatgttttccatgatggctcttgccatcct
ggaatggcattagtaattgatgatcgtctgaaagtttgggatgagaaagatcaatctaga
gttcatgtggttcctgcatttactccatattatgctcctcaagcagaggcaaactgttct
atcccagttctgtgtgtcgccagaaatgttgcatgtaatgttaggggcggcttcttcaaa
gacttcgatgaaggcctcttgccaaggattagcaatgttctttatgaggatgaaataaat
ggtatcccatctgctccagatgttagcaattatttgataacagaggatgagaatgttgca
gtagtgaatggaaatagagatctgttgccttttgatggtatggcagatgctgaggttgag
cggagaatgaaggaagcatctgtcaatgctcaagcattccatccaacagtggcgagcttt
gtgatgccagttgcccctgcccagaattttgtttcgtcttcagtggcaccgttagcccca
cccattggcatggtgccaccttcatttaaccaaccagttgctcaaccagtattttcagat
ccactgcaaggttctccagctagagaagagggtgaagttcctgagtctgagttggatcct
gacacaaggagaaggcttctcatattacagcatggtcaagacacaagggatcctacaccg
ccactcccagtaataccaccggtgcaagtccatgttcctccagtgcaacctcatggaaat
tggtttcccacagaggatggaatgaacccaagtaatctgaatagaagttcagcagctttc
tcattggaatctgatactatgctctatgagaaaaaacaaccacatcatccttcattcttt
catggtggggataatcctgttccctctgatagatttagctatcagaaccagaggtttccc
tctcagctaccacatactgaggatcaccgcatgcttcagaaccatgcacctccaaaatac
agatccttttctggcgaggagctagcagttcggcatgttccctcaagccagagaaataac
caaatagaatcaggaagacactttgcacaatatgcaccctctgctggcatattagaggat
attgcgctgaagtgtggatctaaggtggagtacaggtccacattatgcgatactgcagaa
ctacagttctctatcgaggtttggatagttggagaaaaagtaggtgaaggaattgggagg
acaaggaaagaagcactgcgtcaagctgcagagttttctttaagaaatttggccaataaa
tacctgtcttctgatcctaataagatgactgatatgaaggaaaatggttttggtagcaac
tggaacttttttggatactctggaactaccagggatgatatgttgccagtttcaagtact
tccgaggaatctcgttttttgaaaatggaggagactaattccagaaaaacaggaggttct
gttgctgctctcaaggaactttgcacagttgagggatataacttggtttttcaagcttgt
ccgtctcatccagatggttcagtagggaaagaatcctatgctcaggtagaagttggtgga
caaattctaggcaaaggagtagggataacatgggaagaggccaagctccaggctgctgat
gaggccctcggtactttaagatccatgcttggtcaacttggtcagaaatggtctggttct
ccgaggtcattggcaccaaattttaataagcgcttcaagccagattttccaaggactctg
caaagggttccttatggtacatattccaggatcgaaggccatgttccttga
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