Phragmites australis (common reed): 133919406
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Entry
133919406 CDS
T10575
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 8-like
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
paua Phragmites australis (common reed)
Pathway
paua03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133919406
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paua03019
]
133919406
03036 Chromosome and associated proteins [BR:
paua03036
]
133919406
Enzymes [BR:
paua01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
133919406
Messenger RNA biogenesis [BR:
paua03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
133919406
mRNA degradation factors
5'-3' decay
Decapping complex
133919406
Chromosome and associated proteins [BR:
paua03036
]
Eukaryotic type
Gene silencing
piRNA pathway
133919406
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
NA-iREase2
Cas3-like_C_2
TFIIA
Motif
Other DBs
NCBI-GeneID:
133919406
NCBI-ProteinID:
XP_062219773
LinkDB
All DBs
Position
5:34948311..34955261
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AA seq
506 aa
AA seq
DB search
MDPRARYPPGMGNGRGGNPNYYGRGGPPPQQQYHQHQQTSAAHHQQQYAHRQPQHHNHHQ
LQQQQQQQQWLRRNQIAREAAGAVGTSEPKALAPPTAADGVDSSSQDWKAQLKLPPQDTR
YKTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGT
GKTAAFCIPALEKIDQDKNAIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSL
KDDIIRLYQPVHLLVGTPGRILDLTKKGVCILKECSMLIMDEADKLLSPEFQPSVEQLIR
YLPSSRQILMFSATFPVTVKEFKDKYLPKPYVINLMDELTLKGITQFYAFVEERQKVHCL
NTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGAC
RNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFN
LYRIEQELGTEIKPIPPQIDQAIYCQ
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atggatccgcgcgccaggtaccctccgggcatgggcaacggccgcggcgggaaccccaac
tactacggccgcggcgggccgccgccgcagcagcagtaccaccagcaccagcagacgtcg
gcggcgcaccaccagcagcagtacgcgcataggcagcctcagcaccacaaccaccaccag
ctacagcagcagcagcagcagcagcagtggctgcggcgaaaccaaatcgcccgcgaggca
gcaggcgcggtagggaccagcgagccgaaggccctggcgccacccacggccgccgatggc
gtcgattcgagttcacaagattggaaggcccaattgaagctgccacctcaagatacacgc
tacaagacagaggatgttacagccaccaagggaaacgagtttgaagactattttctcaag
cgtgagctcctgatggggatatatgagaaaggatttgaaagaccctctcctatccaagag
gaaagtattcctattgctttaactggtagtgacattcttgcaagagcgaagaacggaact
ggcaagactgctgcattttgtattcctgcactggaaaagattgatcaagataaaaatgct
attcaagttgttatattggttcccacaagggaattggctctacaaacatcacaagtttgc
aaggagcttggtaagcatttgaagatccaagttatggtcaccactggtggaaccagcctg
aaggatgatattattcgtctgtaccaacctgtccatttacttgttggaacacctgggcgt
attttggatcttacaaagaaaggtgtttgcattttgaaggagtgttcaatgcttattatg
gatgaggcagacaagcttctctctcctgagttccaaccttctgtggaacagttgattcgc
taccttccatcgagtcgacagattttgatgttttcagcaacattccctgtgactgtcaag
gagttcaaggacaaatatctgcctaaaccttatgtaattaaccttatggatgaacttaca
ctgaagggaattacacagttctatgcttttgttgaagaaagacagaaagttcactgcctt
aacacccttttttcaaagcttcaaatcaaccaatcaataatattctgtaactctgtgaat
cgtgttgagctattggcaaagaagatcactgagcttggttactcttgtttctacattcat
gcaaagatgctgcaagaccatcgtaatagagttttccatgacttccgtaatggggcatgc
aggaaccttgtttgtactgatctttttacaaggggaatagatattcaagctgttaatgtt
gttatcaattttgatttccccaagaactctgaaacatatctccacagggttggtagatct
gggagatttggtcaccttggtctggctgtgaatttgatcacctatgaggatcggtttaac
ttgtataggattgaacaagagcttgggactgaaataaaaccaattcctcctcagatagac
caggctatatattgccaataa
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