Phragmites australis (common reed): 133919408
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Entry
133919408 CDS
T10575
Name
(RefSeq) protein SHORTAGE IN CHIASMATA 1 homolog
KO
K28108
shortage in chiasmata 1
Organism
paua Phragmites australis (common reed)
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
paua03036
]
133919408
Chromosome and associated proteins [BR:
paua03036
]
Eukaryotic type
Meiosis-specific proteins
Others
133919408
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Gag_p6
Motif
Other DBs
NCBI-GeneID:
133919408
NCBI-ProteinID:
XP_062219775
LinkDB
All DBs
Position
5:complement(35028143..35041590)
Genome browser
AA seq
1723 aa
AA seq
DB search
MRTRFLATDYFAPSPSATASSDQALALASLHFPSLPVPTLPPDPHLPAPFPFPADFLPAA
SVAGDDLDSLPVASALSEFLAAVIPWPLHVPDIPAVGEGLDDYLYDRGKNGKGFSSMDPV
ACNIPKGLDEISRENGEKEEGSSSEASTVTKRWELLNEFRFEAVEVDLLPVLQRKIASFD
GEELDGGVTLSFDVPDVKIHLDFIDIDTETTITYPAELAEPIYQVEKIPVKHDYDEDCSY
ARDDYCLEIAGLDHGVIIPQLEVSRNSWELDECPTKAAIFNIFLNVVEHLTDGAQVHHPA
FDSTEFLRSRDMDILAFVCKDAPHVDYQADKPITAKAVAEMDLVRINDNILLEKKTALYP
LKPDGICSDLPCSILLEEVEIIDFPSDDVFKMLVQSEKAVMKTSDEIFKDDFDPARRFYE
SVVSSELALVDDTFRSLPTPILTDDKAMRSMLPPIEEVLCSLKPLPLSAADGIYLDWHLI
SEGPCNREICSTYASKVEEVAPCSLSSELQISCQQTSALGIDFLKDFQRSAKLQHEDKQN
EIYVSAPIYRDPPANLEMIQKHRQESDSRGHSHRKELSSEKASSSLFESVSQSNGLNFYL
NARNGTNKVRNNKNVTTLDIPSSKQQAVPFSTRPKVDKLIEIHPVSLSDFIRGLIKDIHR
SYTSALRESVHFRHSFSDGQGLSVSKQELLELITAEGSDGLYNHCKNEDKMELIVLYALK
QVAYYLCFFGLHAAHLYIGNLTGSFENIPERLRNIQCCIGEARLKADNQLFESHPTLSDI
ETILRSNTQIGQKILIVADRAFWLPLGQKLTSMKMTSVELGKYPSATYSDPVSKTNSKTW
VLEEVWKSDCILLDNKNIPASFPFSEFGIILEYGGPNKSSTLLSLAPKLDGLPPLHFLYV
KVDGEDFPVCLFEDNHTDQDLKSTLDAALHTLQKDLQEKMNKMRIVDSLHFIPATNQLQH
LQEKLSKHPTADSLKKVHIDGQLHNQGNLDKKNIVDSHNFVPAADQSDTLNQITIVNSQN
FVPAVEKSSSTSSVSANVMQAPQNNQSASDLPLSVKNDSTKSGILSGPEVVIVVNTGNHG
KNMLFSRRSSYQQILALEKRGVQVVERDVDLPVDLILSAAVCLLWYDTRTFGSSELIKDV
ATNILMPLSFSFSGCIMAFEGENHFLSVVMEASDSLYASAASLDMNLQLFFSQTPKSTDQ
IVLNCIRNATRINQAPSPDISESESLAESFLTAFPSINPLSAHMILSSGSIVDFLGWSHE
QRAQAVEKFHLPPQSISLFSALCKFGELGESRSVMTECSSIDSDISSALLQSPRKKKRRA
MQDFSVTINDPICPNPLNQLCGDYVERDKVFSPPKLREFSHVETMPELPEGSMVNQSLNM
GSEGVFYQPRNHDLSAITGNRMINDDFINGLTPNLRTYNERSSSMVNTCNLSCQSELGAK
QLTKSSFPTSRPSFCRTYSHPTFPSAFEINNDPGNWDVSCGTNQTWQGHLHGDFATSSCR
NDLGSRYHEPREEMIQNPASLLAFLKQDFGCHATSQDSGWEIDYLRQMNEKRRAHQERSR
CNASATLSNSRMRDGSSKILSAPPIESFRYQRNIDTPSRDQSPSNGAHRYGPIESFRYQK
NIDTPLRGQNPSNGAHMYGKGREGTKAQSHRVRKDFKAQPSMNYEKSTVPSIEATWTPMD
KRARQKLSFATYGKEKQSKLVWRHQSSPGVGCGFRKRYREEGT
NT seq
5172 nt
NT seq
+upstream
nt +downstream
nt
atgcggacccgcttcctcgccaccgactacttcgcgccgtcaccgtcggcgaccgcctcc
tccgaccaagcgctagccctagcgtccttgcacttcccttccctccccgtcccgaccctt
cctcccgatccccacctccccgctcccttcccctttcccgccgacttcctccccgccgcg
agcgtcgcgggcgatgatctcgactcgctccctgtcgcctccgcgctctccgagttcctc
gccgccgtcataccgtggcccctgcatgtgccggatatccccgccgtgggcgagggcttg
gatgattacctctacgacaggggcaagaatggcaagggttttagctcgatggatcctgtt
gcttgcaacatccccaagggattggacgagatcagccgcgagaacggtgagaaggaagag
ggatccagttcggaggcctccacagttacgaagcgatgggagctgttgaacgagttcagg
tttgaggctgtagaggtcgatctcctgccggttttgcagagaaaaattgcatcgtttgat
ggtgaagagctggatggtggtgtcaccttatcgtttgatgtcccagatgtgaaaattcat
ctggatttcattgatattgacactgagacaacaataacatatccagctgaacttgcagag
ccaatttatcaagtagaaaaaatccctgtaaaacatgactatgatgaggactgttcttat
gcaagagatgattactgcttggaaattgcgggactagatcatggtgtaataatacctcag
ctggaagttagtaggaactcttgggagcttgatgagtgtccaactaaggcagccatattc
aatatttttcttaatgttgtcgaacacttaactgatggagcacaagttcatcatccagca
tttgactcaactgagttcttgagatcacgtgatatggacatcttagcctttgtttgcaaa
gatgccccacacgtggactatcaagcagataaaccaataacagcgaaggctgtagcagaa
atggatcttgtgaggatcaatgataatattctacttgagaaaaagacagcattataccct
ctcaagcctgatgggatctgttcagacttgccttgctcaattcttttggaggaggtagag
atcattgattttccttccgatgatgtcttcaagatgcttgttcagtcagagaaagctgtg
atgaagacatctgatgaaatattcaaagatgactttgatccagcaagacgtttctatgaa
tcagtggttagctctgagttggctttagttgatgatacattcagatcactacctacgcct
attctaactgatgataaagcaatgagatctatgctccctcctattgaagaagtactatgc
tctctgaagccacttcctctatccgcagcagatggaatttatctggattggcatcttata
tcagaagggccatgcaaccgggagatctgctctacttatgcgagcaaggttgaggaggta
gcaccttgtagtttaagttctgagctgcaaattagttgtcagcagacatcagcgcttggc
attgattttctgaaggattttcagagaagtgcaaagcttcagcatgaggacaaacagaat
gagatttatgtatctgcgcctatatatcgtgatccacctgctaatttggaaatgattcag
aagcacaggcaagaaagtgatagtagaggtcatagccacaggaaggaattgagttcagaa
aaggcatcttcttccttgtttgagtcagtgtcacaatccaatggtctaaacttctacttg
aatgccaggaacggtactaataaagtaagaaataacaagaatgttactactttagacatc
ccctcttcaaaacagcaagcagttcctttttcaaccagacctaaagttgataaactcata
gaaattcatcctgtcagcctctcagattttatccgaggcctgatcaaagacatccatcga
agctatacatctgctttgcgagaaagtgtacatttcagacattctttctcagatgggcaa
ggtttaagtgtttcgaaacaggagcttcttgaactgataactgcagaaggttcagatggc
ttgtataatcactgtaaaaacgaagataagatggagcttattgtactgtatgcattgaag
caggttgcatattacctatgtttctttggtctgcatgctgcccacctgtacataggcaat
ttgactggaagctttgaaaatattcctgagaggttaagaaacattcaatgttgcattggt
gaagcacggttgaaagctgacaatcaactgtttgagtctcatccgacattgtctgacatt
gagacaatcctgagatcgaatacccaaatcggccaaaagatccttatagttgctgataga
gctttctggctgccattgggtcaaaagctaacttcaatgaagatgacatctgttgagcta
ggaaaatacccttctgcaacttattcagatcctgtgagcaagacaaactctaaaacttgg
gtgctggaagaagtatggaaatcagactgcattctgctagataacaagaacattccagct
tcattccctttcagtgagtttggcatcatactggaatatggaggtccaaataaatcatct
accttgttatctctggctcccaaattagatggtttgccaccattgcatttcttgtatgtc
aaagtggatggtgaagactttccagtttgtctttttgaggacaaccacacagaccaggat
ttgaaatccacattggatgctgctttgcatacacttcagaaagacttgcaggagaagatg
aacaaaatgcgtattgttgattcattacactttataccagcaacgaatcaactgcaacat
ctgcaggaaaagctgagcaaacatcccactgctgattcattaaaaaaagttcatatagat
ggtcaacttcacaatcagggaaatctggacaaaaagaatattgttgattcacataacttt
gtgcctgcagctgatcagtcggatactctgaaccaaataaccatagtcaattcacaaaat
tttgtgcctgcagttgagaagagtagctctacttcttctgtatctgccaatgtgatgcaa
gccccccaaaacaaccaatctgctagtgacttacctctcagtgtgaaaaatgacagcacc
aagtcaggaatattgtctggcccagaggtggtgattgttgtaaatactggaaatcatgga
aagaatatgctattctcccgaagatcatcttatcagcagatactagctttggagaaaaga
ggagtacaggttgtagagagagatgttgatcttcctgtggacctaatacttagcgctgca
gtttgtttactatggtatgataccagaaccttcgggtccagtgaattaataaaggatgtt
gctaccaacattctgatgccacttagcttctctttcagtggctgcataatggccttcgag
ggtgaaaaccacttcctttctgttgtaatggaggcatctgattctctatatgcttcagct
gctagcctggacatgaacttgcagctattcttctcacaaacgcccaaatcaacagatcaa
atcgttctcaattgcatcaggaatgcgactaggataaatcaagctccttctccagatata
tctgaatcagaaagcctggctgaatcctttctcacggcattcccttcaattaatcctctg
tctgcgcacatgatactttcttctggcagtattgtggatttcctcggttggtcacatgag
caacgtgctcaggctgttgaaaagtttcatttgcccccacagagcatttctctcttcagt
gctttgtgcaaatttggtgagctaggtgaatcaaggtccgtaatgactgaatgttcttct
atagattcagatatcagtagtgcattgttgcagtccccaaggaaaaagaaaaggcgtgcc
atgcaagacttttcagtaacaataaatgatcccatctgccctaatcctcttaatcaattg
tgtggtgattatgtagaacgtgacaaggtattctcaccgcctaagttgagggaattctct
cacgtggagacaatgcctgagctcccagaaggctctatggtcaatcaaagtttgaatatg
gggagtgaaggcgtcttttatcagccaagaaatcatgatctgagtgcaatcactgggaat
cggatgattaatgatgatttcatcaatgggttgactccaaatttaagaacatacaatgaa
aggagtagcagtatggtgaatacatgcaatctttcttgtcaatctgaattaggagctaaa
caactaaccaaaagctcctttcccactagcagaccatcattctgcagaacttacagtcat
ccaacatttccatccgcatttgagatcaataacgaccctggtaactgggatgtttcttgc
ggtacaaatcaaacatggcagggtcatttacatggggatttcgccacaagttcttgcaga
aacgatctgggcagcagatatcatgaaccaagagaggaaatgatacagaatccagcaagt
ttgcttgcttttctgaagcaggattttggctgtcatgcaacgtcacaagattcaggctgg
gaaattgattatcttagacaaatgaatgaaaagagaagagcacaccaggagagatctaga
tgcaatgcttcagcaacattgtcaaattcaagaatgagagatggctcatctaaaattctg
agtgctcctcctattgaatctttcagatatcaaagaaatatagacactccttcgagggac
cagagcccttcaaatggggctcacaggtatggtcctattgaatctttcagatatcaaaaa
aatatagacactcctttgaggggccagaacccttcaaatggggctcatatgtatgggaaa
ggcagagaaggaactaaagcacagagccatagggtgcgaaaggatttcaaggcacaacca
agtatgaattatgaaaagagcacagtgccatctatcgaggcaacatggactcctatggac
aagagagcgagacagaaactttcatttgcaacatatgggaaggaaaaacaaagcaagctg
gtctggagacaccaaagcagccctggtgttggatgtggcttccggaaaagataccgggaa
gaaggtacgtag
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integrated database retrieval system
