Phragmites australis (common reed): 133919500
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Entry
133919500 CDS
T10575
Name
(RefSeq) homeobox-leucine zipper protein ROC5-like isoform X1
KO
K09338
homeobox-leucine zipper protein
Organism
paua Phragmites australis (common reed)
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
paua03000
]
133919500
Transcription factors [BR:
paua03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain other
133919500
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PDF2_C
START
Homeodomain
Homeobox_KN
MRP-L20
Motif
Other DBs
NCBI-GeneID:
133919500
NCBI-ProteinID:
XP_062219894
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Position
5:complement(37583652..37590366)
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AA seq
800 aa
AA seq
DB search
MSFGSLFDGGAGGGGGGGMQFPYSGGFSSSPALSLGLDNAGGMGRRMLPGGAGPDGGMAR
DADAENDSRSGSDHLDAMSGGGEDEDDVEPGNPRKRKKRYHRHTPQQIQELEGLFKECPH
PDEKQRGELSKRLGLDPRQVKFWFQNRRTQMKTQLERHENALLKQENDKLRAENMTIREA
MRSPMCGGCGSPAMLGEVSLEEHHLRIENARLKDELNRVYALATKFLGKPMSIHSGAQLP
PHLPMPMPSSSLELAVGGLGGIGSMPSATMPGSMSEFAGGVSSPLGTVITPARATGSAPP
SMVGIDRSMLLELAISAMDELVKMAQMDEPLWVTSLTGAPNKETLNFEEYVHSLPCIGLK
PVGFVSEVSRESGLVIIDDSVALVETLMDERRWSDMFSCMIAKATILEEVSTGTAGSRNG
ALLLMKAELQVLSPLVTIREVTFLRFCKQLAEGAWAVVDMSIDGLVRDQNSATTSTAGNI
KCRRLPSGCVMQDTPNGYCKVTWVEHTEYDEASVHQLYRPLLRSGLAFGARRWLATLQRQ
CEGLAILMSPDTVSANDSSVITQEGKRSMLKLAQRMTENFCAGVSASSAREWSKLDGAAG
SIGEDVRVMARKSVNEPGEPPGVVLSAATSVWVPVAPEKLFNFLRDEQLRAEWDILSNGG
PMQEMANIAKGQEHGNSVSLLRASAMSANQSSMLILQETCTDASGSMVVYAPVDIPAMQL
VMNGGDSTYVALLPSGFAILPDGPSISAGHKTGGSLLTVAFQILVNSQPTAKLTVESVET
VNNLISCTIKKIKNALQCDA
NT seq
2403 nt
NT seq
+upstream
nt +downstream
nt
atgagcttcgggagtctatttgacggtggggccggtggaggaggcggcggcgggatgcag
ttcccgtactccggcgggttctcgtcctcaccggctctctctctcgggctggacaacgcc
ggcggcatgggcaggcggatgcttcctggtggcgcgggcccagatggtgggatggcgagg
gacgcggacgcggagaacgacagccggtcggggagcgaccacctcgacgccatgtccggc
ggcggcgaggacgaggacgacgtcgagccaggcaacccccgcaagcgcaagaagcgctac
caccgccacacgccgcagcagatccaggagctcgaagggctgttcaaggagtgccctcac
ccggacgagaagcagcgcggcgagctgagcaagagactgggcctcgacccgcgccaggtc
aagttctggttccagaaccgtcgcacgcagatgaagacacaactggagcggcacgagaac
gccctgctgaagcaggagaatgataagttgcgcgccgagaatatgacgatccgtgaggcc
atgcgcagcccgatgtgcggcggctgcgggagccccgccatgcttggggaggtgtccctg
gaggagcaccacctgcgcatcgagaatgcgcggctcaaggatgagctcaaccgcgtctac
gcccttgctaccaagttcctcggcaagcccatgtccatccactcgggggcccagctgccg
ccacacctgcccatgcccatgccgagctcgtcactggagctcgcagtcgggggccttggt
ggcatagggtctatgccctctgccacgatgcctggttccatgagtgagtttgctgggggt
gtgtctagcccgttgggcacggtaatcacaccagcacgggcaactggatctgctccgccg
tctatggtgggcatcgacaggtccatgttattggagcttgcgatcagcgcaatggatgaa
cttgtcaagatggcacagatggacgagcctttgtgggttacaagcctgactggtgctccc
aacaaggaaacgctgaactttgaggagtatgtccactccttgccgtgcatcggcttgaag
cctgtgggttttgtgtctgaggtctctagggagtctggccttgtcatcatcgacgacagc
gttgcccttgtagagacccttatggatgagagacggtggtctgacatgttctcgtgcatg
attgctaaggccacgatcctagaggaggtgtcaaccggcactgcaggaagccgaaatggc
gcgctgctgctgatgaaggctgaactacaggtactctcacctttagtcaccatcagggag
gttacatttctcaggttttgcaagcagttggccgagggtgcatgggcagtagtggatatg
tctatcgatggattggtgagagatcagaactctgcaacaacatctaccgctggaaatata
aagtgcaggaggttaccttctggctgtgtgatgcaagacactcccaatggctactgtaag
gtcacatgggttgagcatacggaatacgatgaggcatcagtgcaccagctctatcggccg
ctactccggtctgggctcgcctttggagccaggcggtggcttgcaacgctgcagcgccag
tgtgaaggcctggccatcctcatgtcccctgatacagtttcggcaaatgactcgtcagtt
ataacgcaagagggtaagcgaagcatgctgaagctagcacaacggatgacggagaacttc
tgtgctggggtgagcgcatcatctgcacgtgaatggagcaagctggacggcgcagcaggt
agcatcggggaggacgtgcgtgtcatggcacggaagagcgtgaacgagcctggggagcca
ccgggcgtggtgctgagcgctgccacatcggtttgggtgcccgtggctcctgagaagctg
tttaacttcctccgtgatgaacagctgcgtgcagagtgggacatcctcagcaatggaggc
cccatgcaggagatggctaacattgccaagggacaggagcatggaaactcggtgtccctc
cttagggccagtgcaatgagtgccaaccagagcagcatgttgatccttcaggagacttgc
actgatgcgtcaggctcgatggttgtgtacgctccagtggacatcccggcaatgcagctc
gtcatgaacggcggggactccacctatgttgctctgctgccatctgggttcgccatcctg
ccggacggtcccagcatcagcgccgggcacaaaactggcggctctttgctcaccgtggca
ttccagatcctcgtcaacagccagccgaccgccaagctcaccgtggaatcagtggagacc
gtgaacaacctcatttcctgcaccatcaagaagatcaagaatgcgctgcagtgtgacgcc
tga
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