Phragmites australis (common reed): 133919543
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Entry
133919543 CDS
T10575
Name
(RefSeq) protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1-like isoform X1
KO
K11661
helicase SRCAP/SWR1 [EC:5.6.2.-]
Organism
paua Phragmites australis (common reed)
Pathway
paua03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
133919543
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
paua03036
]
133919543
Chromosome and associated proteins [BR:
paua03036
]
Eukaryotic type
Chromatin remodeling factors
SRCAP complex
133919543
SWR1 complex
133919543
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
HSA
ResIII
DEAD
Myb_DNA-bind_6
DBINO
Motif
Other DBs
NCBI-GeneID:
133919543
NCBI-ProteinID:
XP_062219945
LinkDB
All DBs
Position
5:complement(38519002..38534007)
Genome browser
AA seq
2030 aa
AA seq
DB search
MASKGPRSKLDHETRARRQKALEAPREPRRPKVHWDHVLAEMVWLAKEFDSERKWKLSMA
KKIAQRANKSIVDQATKGERKQKEEEHRMRKVALNISKDVKKFWIKIEKLVVYKHQLELE
ERKKKALDKQLDFLLGQTERYSTMLAENLVDMPYPQKLENVTLQTNQSSHMEEVAEENIN
ASTPDDLDNMELDDDYESSLDEEPEDDERTIDEDEAQITEAERNEELAALQAEADLPLDE
ILKMYTETKVQYFSVSRESSPDVKDNLSNLDSKNFIVDYSNQANGCDHESAHSSSDEGNS
SEEVDDGHSYAEFVKKNHGKSNGNISSVDEQEDEDYVVADEGKDDEATLSEEEELAKKED
PDHLEEIKLLQKESEIPLEELLARYQKDGYADHGTTELENSPSIVEEVNTDMSVDDQSAN
ILNVNSDTYEDHQSMDALESEHNVSTNALESETASEPCVQEFFLEENKLTDVKTVNGDKS
DGVIADAAAAARSAQPTGNTFLTTKVRTKFPFLLKHSLREYQHIGLDWLVAMYEKRLNGI
LADEMGLGKTIMTISLLAHLACDKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFG
SAKERKQKRQGWMKANYFHVCITTYRLVVQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQ
TLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHVFQSHQEFKDWFCNPISGMVDGQDK
VNKEIIDRLHNVLRPFILRRLKRDVEKQLPKKHEHIIYCRLSRRQRNLYEDFIASSETQA
TLAGGNYFGMISIIMQLRKVCNHPDLFEGRPIISSFDMAGINMQLSYSVCMLLDKSLFSQ
VDLSHMNFVFTQNEYSMTSWEVDEVVEAFSPSITSVCSGPEIFCSNKDHQASNVTNIFED
IQKALREERIKESRERAASIAWWNRVRCQKRPVYGTNMRKVLTVKHPVLDVLEKRNNPFC
HMDFSSNLADLVLPSVERFQKMLDIVESFTFAIPAARAPTPVCWCSKGKSPVFVEPAYRE
TCMNEFSPILSPIRPAIVRRQVYFPDRRLIQFDCGKLQKLAILLRRLKPEGHRALIFTQM
TKMLDVLEEFINLYGYTYLRLDGSTPPEERQTLMQRFNTNPKFFLFILSTRSGGVGINLV
GADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRALDD
LVIQRGSYNTEFFKKLDPMEFFSGHTSFHIEEQQKDCSMAAGSSNDVSLALSNADVEAAI
RQAEDEADYMALKKLEQEEAVDNQEFSEEVAGRLEDDEFVNEEDVKPDEHFNEEHKYNSS
DVDKDKNIALPINQLDEEKALTLAGGDEDIDMLADVKQMAAAAAAAGQASSSFENQLRPI
DRYAMRFMQLWDPVIDKAAVNHQVNIEEEEWELDRIEKLKEDLEAEIDEDQEPLSYESWD
VDFATTAYRQHVEALTQKQLLEEQERQAREAEKELEEKNDNMSIHHRKSKKNKKKTGKFK
SLKKGRLSSESEVILEETSVDTMSIDDNAPSPEVISDESLHHYSNKRKKIMSATEEQNSD
SRSLKKLKKAPKSNCISEALSPKHLLAGKQLKLKEELNDSDPKSATRIKSDGRISVPCMP
VKRIILIKPERLKKKGLWSRDCAPDSWTSEEDAVLCATVHEYGPLWELSSDFLHSLPGGA
FYKGRYHHPVHCCERYRELFCKHAMSATDNSNNEKVPSGTGKAILRISEDQTQMLVNVTS
GLPNNELLLQKHFMAVLSSVWRSKCCRDSQCVMSTYSSALHMVSPAKKPGGENWSMTNFR
PSFNLIRTALTDAHVQCTQMVIAPPTRNQEYRRNYLELELDFLTDRHGYEEDFPSIVNVS
ILEPEPLKQAVEPVEQSLLSALSCRQAENRLRIASEACFEGEGSHWASSAFHIYDAARHK
SGPKSTGKHKAASESGRLPKSKIQKITEPHQEGPIGMKNFLRAPGQLLQSTAEFHISESL
SDFGISDSEFTYSEDLSQEADLLEFLPYQDDPDFLPGIELEPLSDLTDIG
NT seq
6093 nt
NT seq
+upstream
nt +downstream
nt
atggcatcaaaaggtccccggtcaaagctagatcacgagacaagagctagacgtcagaag
gctcttgaagctccaagagagcctcgaaggccaaaagttcattgggaccatgtccttgct
gagatggtctggctggcaaaggaatttgattctgagagaaaatggaagttgtccatggct
aaaaagattgctcaaagagccaataagagcatagttgaccaagcaacaaagggcgagaga
aagcagaaggaggaggaacatagaatgagaaaagtagcccttaatatttctaaggatgtg
aagaagttttggatcaaaatagaaaagctggttgtctataagcatcaactggagcttgag
gaaaggaagaaaaaggcccttgataagcaacttgatttcctattaggtcagactgaaagg
tattcaacaatgttggctgaaaaccttgtggacatgccctatccccaaaaactagaaaac
gtaactttgcaaacaaatcaatcatcacatatggaggaagtagcagaagagaacataaat
gcatcaactcctgatgatcttgataacatggaattggatgatgattatgagagctccttg
gatgaagagccagaagatgatgagcgcacaattgatgaggatgaagctcagatcacggaa
gctgagcgcaatgaagaattagctgctttacaggcagaagctgacctaccactggatgaa
atactaaagatgtacacagaaaccaaagttcaatatttctcagttagcagggaaagcagt
ccagatgtcaaagacaatttaagtaacttagattcgaagaattttattgtagattattca
aaccaggctaatggctgtgatcatgaatctgctcactcttcaagtgacgaaggcaattct
tctgaggaagtggacgatggtcattcttatgctgagtttgtgaagaagaatcatggaaaa
agtaatggaaatatctcgtctgtcgatgagcaggaggatgaagattatgttgttgctgat
gagggaaaggatgacgaagcaactttatctgaagaggaagagttggcaaagaaagaagac
cctgatcatctggaagagattaagttactgcagaaggagagcgagatcccactagaagaa
cttcttgcgaggtaccaaaaggatggctatgcagatcatggtacaacagagttggagaat
tcacccagtattgttgaagaggtcaatactgacatgtctgtggatgatcaatccgcaaac
attctgaatgtgaacagtgatacatatgaggatcaccaatccatggatgcgctggaatct
gagcataatgtgagtactaatgctctagaatcagaaacagcatcagagccttgtgtgcaa
gaattttttttggaagagaataagctcactgatgttaagacagtcaatggagataagagt
gatggtgtaattgctgatgctgcggctgctgcaaggtcagcacaaccaactggtaacacc
ttcttgacaacaaaagtgcgcacaaagttccccttccttcttaagcattctcttcgtgaa
taccagcatatagggttggattggttggttgctatgtatgagaagaggcttaatggaatt
ctagcagatgagatgggcttagggaagacaatcatgactatctccttgctggcacacctt
gcatgtgataaggggatatggggtccacatcttatcgttgtgccgaccagtgttatgcta
aattgggagactgaatttctcaagtggtgtcctgcttttaaaatactgacttattttgga
agtgcaaaggagagaaagcagaaacgtcagggctggatgaaagcaaattacttccatgta
tgcatcacaacatataggcttgttgttcaggactctaaagtatttaagcgaaaaaaatgg
aagtatctaattcttgatgaggctcatctgataaagaactggaaatcacagagatggcag
actttgcttaattttaattcaaagcgacggattcttttgactggaactcctttgcaaaac
gacctgatggaactttggtctctcatgcactttttgatgcctcatgtatttcagtctcac
caagagttcaaggattggttctgcaatcctatttcaggaatggtggacggccaagataaa
gttaacaaagaaattatagatcgattgcacaatgtccttcgtccatttatactgcgtcga
ctgaaacgggatgttgagaaacagttgccaaagaagcacgagcatatcatatattgccga
ctctctagaagacaaagaaacttatacgaagattttattgctagctcagagacacaagca
acacttgcaggtgggaattattttgggatgattagtatcattatgcaacttagaaaggtt
tgtaaccatccagatctttttgaaggtcgcccaataataagctcgtttgacatggcaggg
attaacatgcagctcagctattctgtttgcatgctccttgataagagtctattttctcag
gttgacttatctcatatgaattttgtgtttactcaaaatgaatatagcatgacttcctgg
gaagttgacgaggtcgttgaggctttttctccaagcatcacttccgtgtgctctggtccg
gagattttttgctctaataaggatcatcaggcaagtaatgtaacaaatatttttgaagat
attcagaaagctctacgggaggagagaataaaagaatccagagaaagggcagcttccatt
gcatggtggaatagggtgcggtgccaaaagaggcctgtctatggcacaaacatgagaaag
gttttgactgtaaagcatcctgtattggatgttcttgagaagaggaacaaccctttctgc
cacatggatttttcatcaaaccttgcagatcttgttcttccatctgtggaacgctttcag
aaaatgcttgatatcgttgaatcatttacatttgctattcctgctgcacgagctcctacc
cctgtttgctggtgcagcaaagggaagtctcctgtttttgttgaaccggcatatagagaa
acatgcatgaatgagttttctcccattctctctcctatacgacctgcgattgttcgtcgt
caagtctactttcctgacaggcgtttgatccagtttgattgtgggaagttgcagaaactt
gctattctgctgaggcgtttgaagccagaagggcacagagccttgatatttactcagatg
actaagatgcttgacgtcttggaagagttcataaatttatatggatatacatatttacgg
ttagatggttctaccccgccagaagagaggcagactctaatgcagaggttcaatactaat
ccaaagtttttccttttcattttgtcaacccgtagtggtggtgtgggaatcaacctagta
ggtgcggacactgtcatcttctatgacagtgactggaaccctgcaatggaccaacaagcg
caagacagatgtcataggattggtcaaactcgtgaagttcacatatatagactcattagt
gaaagcactatagaggagaatattctcaagaaagcaaatcagaaacgagctcttgatgat
ctagtgatacagcgcggtagctacaatacagaattcttcaagaaacttgatcccatggaa
ttcttttctgggcatacgtcttttcatatagaagaacagcagaaggactgctctatggct
gctggatcttcaaatgatgtgagtctggcactgtcaaatgcagatgttgaagcagctatt
agacaagcagaggatgaagctgactatatggctctcaagaagctggagcaggaagaagct
gtcgacaatcaagagttcagtgaggaggttgctggaagactagaggatgatgagtttgta
aatgaggaggatgtaaaacccgacgaacattttaacgaggaacataaatacaactcttct
gatgtcgataaggataagaatatcgctttgcctatcaatcaattagatgaagaaaaggct
cttacattggctggtggtgacgaagatatcgacatgctcgctgatgtgaaacagatggct
gcagcagctgctgcagctggacaagcaagttcgtctttcgaaaatcagctccggcctatt
gatagatacgcaatgcgttttatgcaactctgggatccagtaatcgacaaagctgctgta
aatcatcaggtaaatattgaagaagaagaatgggagcttgatcgtattgaaaaactcaaa
gaggatttagaagcagaaattgatgaagaccaggaaccactttcttatgaatcatgggat
gttgattttgctactactgcctatcgccaacatgttgaggctctgactcaaaagcagttg
ttggaagaacaggaaagacaagctcgtgaagcggaaaaagagttagaggaaaagaatgat
aatatgagcattcaccacagaaagtcaaaaaagaacaaaaagaagacaggaaagtttaag
tccctgaaaaaggggcgtttgtcatctgagtcagaggtcatactggaggaaacgtctgta
gatacaatgagcattgatgacaatgcaccctcacctgaggttataagtgatgaatcgcta
caccattattctaacaagcgtaagaagataatgtctgcgaccgaggagcaaaacagcgac
agcagaagtttgaagaagctcaagaaagcccctaaatcaaattgtatctcggaagccttg
tcacctaagcacttgcttgcaggcaagcagcttaagttgaaggaggagctcaatgattct
gacccaaaatcagcaactagaattaagagtgatggcagaatttccgtcccttgcatgcca
gtaaaacgtatcattttaatcaagcccgagagactgaaaaagaagggactatggtctcga
gattgtgctccagactcatggacatctgaggaagatgcagttctttgtgcaactgtacat
gagtatggtcctctttgggagctgtccagtgattttcttcattccttaccaggcggggca
ttttataagggaagatatcatcatcctgtgcattgctgtgagagataccgagaactattc
tgcaaacatgccatgtcggcaacagataattcaaacaatgaaaaggttccttctggaact
ggaaaggctatactgcgaatatctgaggatcaaactcagatgttggtgaatgtgaccagt
ggacttcctaacaatgaattacttctccagaaacactttatggccgtactttcatctgtt
tggagatcaaaatgttgccgtgattcccagtgtgttatgagtacttactctagtgcactc
catatggtttctcctgctaagaagcctggtggtgagaactggtccatgacaaactttaga
ccaagcttcaatctaattaggacagcccttacagatgctcatgttcaatgtacacaaatg
gtgattgcaccaccaacgagaaaccaggaataccgtcggaactatttggagttagagttg
gatttcctgacagatcgacatggttatgaggaagacttcccgtctatagtaaatgtgtcc
atactagaaccagaaccacttaaacaggctgtggaaccagtggaacaatcattactgtct
gcactttcttgtagacaagcagagaaccgactcaggatagcatcagaagcttgtttcgaa
ggtgaaggttctcattgggcatcatcagctttccacatatatgatgctgctcggcacaaa
tctggtccaaagtccacaggaaagcacaaagcagcatcagaatctggaagacttcccaaa
tctaaaatccagaagattactgaaccacatcaggaagggccaattggcatgaagaatttt
ctccgggcgcctggtcaactattgcaaagtacagctgagtttcacattagcgagtcccta
tctgactttggtatcagtgattctgaattcacctactctgaggatctctctcaagaggct
gacctccttgagttcctcccataccaggatgaccctgatttccttcctggtattgagtta
gaacctctttcagatttgacagacattggatga
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integrated database retrieval system
