Phragmites australis (common reed): 133919697
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Entry
133919697 CDS
T10575
Name
(RefSeq) enhancer of mRNA-decapping protein 4-like
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
paua Phragmites australis (common reed)
Pathway
paua03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133919697
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paua03019
]
133919697
Messenger RNA biogenesis [BR:
paua03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
133919697
mRNA degradation factors
5'-3' decay
Decapping complex
133919697
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EDC4_C
Ge1_WD40
WD40
Beta-prop_WDR3_1st
WD40_CDC20-Fz
Beta-prop_WDR5
WD40_WDHD1_1st
Beta-prop_THOC3
WD40_Prp19
Beta-prop_WDR3_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_WDR36-Utp21_1st
WD40_MABP1-WDR62_2nd
Beta-prop_WDR36-Utp21_2nd
Beta-prop_TEP1_2nd
Beta-prop_WDR41
WDR55
WD40_Gbeta
Beta-prop_EML_2
Beta-prop_Vps41
Beta-prop_EDC4L
Beta-prop_SCAP
DUF445
Motif
Other DBs
NCBI-GeneID:
133919697
NCBI-ProteinID:
XP_062220161
LinkDB
All DBs
Position
5:complement(40847509..40856165)
Genome browser
AA seq
1329 aa
AA seq
DB search
MASPSGNPNPNPPFELGKLFRPPPNPMPTATAAPIFPGRAGGPAGPPPPSGPYSYPPVTP
PFHRGPYLHYPQDPHPHAMPRSVVSFPMPNPNPNPNPNVNPNAAAPGPNPGARLMQLLGN
SGQTQLETAVSMSPPTSEFAQPPPLPAMPSAPPVRMLSSTSSKVPRGRLLGGGDRAVHDV
DSRLPGEAQPPQLEVTPITKYTSDPGLVLGRQIAVNRTYIVYGLKLGNIRVLNINTALRS
LLRGHTQRVTDMAFFAEDVHRLASASVDGRIYVWRVDEGPDEENKPQITGKIEIAIQIVG
DSEAYHPRICWHSHKQEILFVGIGNCVLRIDTTKVGRGRDFTVEEPVICHLEKLIDGVRL
VGKHDGNVTDLSISQWMSTRLASGSKDGMVKIWDDRKTVPLSILKPHDGQAVYSVAFLTA
PEHPNHINLITSGPLNREIKIWASTNEDGWLLPSDSETWKCTQTLELVSSLEPRVEEAFF
NQVAVLPQASLILLANAKKNAIYAVHVEYGPDPASTRLDYIADFTVAMPILSLTGTHESQ
PDGAQVVQVYCVQTMAIQQYGLELSLCSPPTADTTGSGRDPATSRVYETPLEVVGTESSA
GTSFTDSCSVGAPSKPSTVDQSAEFDLKPSAPPLTYSEGDNSMHLPSASLASKMELAGSG
PSPGSRDIDQSAYEYIANRNMERDALKRQDTPMPMRKDILGKDEPRDSHSDVAMLPNPRL
MFQVGGNATHLVTPSEIISGTLSSAENNDVSKSDIGKIQDVSSSSSRIAEVEPKHIDESK
PDKNSELEAIKETQSSSEQTVEMISERSVTTDKYSVEESQLPSDRPVSEQTVAADENILK
KFVEMPEKSDHSSASREQSSSYAKEEKVLHPQTSCQSSPSVSVFNSIESHEPLSCAYPPI
DSFPEVASTQGMLQQLIAMQKDMEKQLGTMISAPIAKEGKRLETSLGRTMEKSIKSNIDA
VWARLQEENTKREKAERERMQQLVTLITSSINKDYPAMLEKSLKKEISSLGPVVARAITP
IIEKCLASAVSDSVQKGVGDKVCNQLDKSVSGKLEATLARQIQMQFHTSVKQALQDALRT
SFESLLVPAFEQSCKTMFEQVDGAFQKGMSEHTVAIQQQVEAAHTPLALTLKETINSASS
ITQSFSSELLDGHRKLLALVASGNAKAHNSNALQPINGPMGGPPEVEAPLDPMKELGRLI
SERKFDEAFTMALQRGDVSIVSWLCSQVDLRALCAMVPVPLNQGVLLALLQQLAVDINNE
TSRKVQWMTDVAMAINPTDSMIAVHVRPIFEQVYSQLAHQRSLPTTNASDGTSIRVIMHV
INSVLLSFK
NT seq
3990 nt
NT seq
+upstream
nt +downstream
nt
atggcgtctccatccgggaaccctaaccccaacccacccttcgagctcgggaagctattc
aggccgcccccgaatcccatgcccaccgctaccgccgcccccatcttccccggccgcgcc
ggaggccccgcgggcccgccgccgccgtccggtccgtactcctaccctccggttacccct
cccttccaccgcggaccctacctccactacccgcaggaccctcatccccatgccatgcct
cgctccgtcgtctccttccccatgccaaatcccaaccccaaccccaacccgaacgttaac
cccaacgctgctgccccgggccccaaccccggcgcgcgcctcatgcagctgctcggcaac
tccgggcagacccaacttgagaccgcggtctccatgtccccgccgacgtcggagttcgcg
cagccgccgccgctaccggcgatgccgtccgcgccgccagtaaggatgctgagcagcacc
agcagcaaggtgcccagggggcggctgctgggcggcggggaccgagcggtgcacgatgtt
gactcgcggctgcccggggaagcgcaaccgccgcagctggaggtgacaccgatcaccaag
tacacgtcggatccggggctcgtgctgggaaggcagatcgcggtgaaccggacgtacatc
gtgtatggactcaagcttgggaacatccgtgtgctgaacatcaacaccgcgcttcgctca
ctgcttcggggtcacacacagagggtgacagacatggctttctttgctgaggatgtccat
cgattggcaagtgctagtgtagatgggcggatatatgtgtggagggttgatgagggacct
gatgaggaaaataaaccacaaattactggaaagattgaaatcgccattcagattgtaggc
gattctgaagcttaccatccaaggatctgttggcactctcataagcaagaaattctgttt
gttggaattggaaactgtgtcttaagaatagatacgactaaagtgggaaggggaagagac
tttactgtggaagaacctgttatatgtcatcttgaaaagcttattgatggcgtgcgctta
gttggtaagcatgatggcaatgtgacagatttgtccatatctcaatggatgagtacacgc
ctggcgtcaggatcaaaggatggcatggtaaagatctgggatgatcgcaagacagtgcct
ctatccattctaaaaccacatgatggtcaagctgtttactcggttgcttttcttacggca
cctgagcatccaaatcatataaatctcattacatcaggtcctcttaaccgggaaattaaa
atttgggcttctactaatgaagatggttggttattaccaagcgattctgagacttggaag
tgtactcagaccttggaacttgttagttctttggaacctagagttgaggaggcatttttc
aaccaggtcgcagtgctgcctcaagcaagcctgattttgcttgcaaatgctaaaaagaat
gctatttacgccgtgcatgttgaatatggcccagatcctgcttctactcgcttggactat
atagcagatttcacagttgcaatgcctattttaagcctcactggaacacatgaaagccaa
cctgatggtgcacaagttgttcaagtatactgtgtccaaacaatggccattcagcagtac
ggactggagttatcactctgttcgcctcctacagctgatactactgggtctggaagagat
ccagctacctcccgtgtttatgagacacctctggaagtggtaggaacagagtcatctgca
ggaactagtttcaccgactcttgctctgtcggtgctcctagtaaaccatcaactgttgac
cagtctgcagagtttgatctgaaaccatcagctccaccgcttacatactcagaaggtgat
aattccatgcatcttccatctgcatctcttgcatcaaagatggagcttgctggatcagga
ccatcacctggcagccgtgatatagaccaatcagcttatgaatacattgcaaacagaaac
atggagcgtgatgctttgaaaaggcaagatacgcccatgcccatgagaaaggatatctta
ggaaaggatgagccaagagacagtcacagcgatgttgcaatgcttccaaatccccgtttg
atgtttcaggttggagggaatgctacacacttggtaactccgtctgaaattatatcgggc
actctctcttctgctgaaaacaatgatgtctctaaatctgatattggaaaaattcaagat
gtttctagtagcagctctcggattgcagaagtggaaccaaaacatattgatgagagtaaa
ccagataaaaattcagaacttgaagctatcaaggaaactcagagttcgtcagagcaaact
gttgaaatgatcagtgagcgctcagtaacaactgataagtacagtgtggaagaatcacag
ttaccatctgatagaccggtgtctgagcaaactgttgctgctgatgaaaatatcctgaaa
aagtttgtggaaatgcctgagaaaagtgaccattcctctgcttccagggagcaatcatct
tcgtatgcgaaggaggagaaagttttgcatcctcaaacatcttgtcagtcatctccttct
gtgagtgttttcaactcaattgagtcacatgagcctttgagctgcgcataccctcctatc
gactcctttccagaagttgcttccacacaagggatgctgcaacagcttatagcgatgcaa
aaggacatggaaaagcaattgggtactatgatttctgcccctattgcaaaggaaggcaaa
agactcgagacatcattagggcgtaccatggagaaatctatcaagtctaacattgatgcc
gtttgggctcgtctccaggaggaaaatactaaacgtgaaaaggctgaaagagagcgaatg
caacaattggttactctcatcacgagctcaataaacaaggactatcctgctatgttggag
aagtcacttaagaaagagatctcttcacttgggcctgttgttgcacgggcaataacacct
attattgagaaatgcttagcctctgctgtttctgattcagttcagaaaggggtgggtgat
aaggtgtgcaatcagctggacaagtctgttagtggaaaacttgaagctacacttgctagg
caaatccaaatgcagtttcatacatctgtaaaacaagctcttcaggatgctttacgcact
agcttcgaatcattgcttgttccagcatttgaacaatcttgcaagacaatgtttgagcaa
gtagatggtgcatttcagaaaggaatgtctgagcacactgttgctattcagcagcaggtt
gaggcagcacatactccattagcgttaactttaaaggaaaccatcaattctgcatcatca
atcacccagagtttttcatcggagttacttgatggccatcgcaagctattggcactggtt
gcttctgggaatgctaaggcgcataattccaatgctttgcagcccatcaacggtcctatg
ggcggtcccccagaggtcgaggctccgttagatccgatgaaagagctgggcagactgata
tctgaacgcaagtttgatgaggcatttacaatggctcttcaaagaggtgacgtttccatt
gtgtcttggctgtgttctcaggttgatttgcgtgcattatgtgcaatggtccctgtccct
ctgaaccagggggtccttctggccttattgcagcagctagcagttgacatcaacaatgaa
acatcacggaaggttcaatggatgacagatgttgccatggcaatcaatccaacagactcg
atgatcgccgtgcacgtgcggcccatctttgagcaagtctacagccaactggcccaccaa
cggtcactcccaaccacgaacgcatcagatggaaccagcatccgcgtgatcatgcatgtt
attaactcggttctgcttagctttaagtga
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integrated database retrieval system
