Phragmites australis (common reed): 133919879
Help
Entry
133919879 CDS
T10575
Name
(RefSeq) E3 ubiquitin-protein ligase RZF1-like
KO
K11982
E3 ubiquitin-protein ligase RNF115/126 [EC:
2.3.2.27
]
Organism
paua Phragmites australis (common reed)
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
paua04131
]
133919879
04121 Ubiquitin system [BR:
paua04121
]
133919879
Enzymes [BR:
paua01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
133919879
Membrane trafficking [BR:
paua04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Rab associated proteins
133919879
Ubiquitin system [BR:
paua04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
133919879
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-RING_2
Zn_ribbon_19
zf-C3HC4_2
zf-RING_11
zf-C3HC4
zf-rbx1
zf-RING_UBOX
zf-RING_5
Zf_IFT144_1st
zf-ANAPC11
zf-RING_16
FAR1_N
Prok-RING_1
VPS18_RING_C
Motif
Other DBs
NCBI-GeneID:
133919879
NCBI-ProteinID:
XP_062220411
LinkDB
All DBs
Position
5:<43722123..43723299
Genome browser
AA seq
315 aa
AA seq
DB search
SVIRPTAVSTTTPAQYGGARHRACRMYWCYQCGRALRIISYPATDVFCPRCFGCFLHEID
PPPRPALPPPHFLPHPFHPQNQYDGHPRRLVIYGGGPTTAPAPARAPAPVPPRRRIPSPP
PPPMARRPSTPPAIDPGDYFTGRNLNGLIEELTQNDRPGLAPAPSSAIDSLPTVRISGAH
LSDGSQCPVCKEDFELGEAAGQLPCKHVYHSDCIVPWLRLHNSCPVCRYQLPGAASNGSS
HAAPRGSGRNREREREPPTTTRWGSFSRGLDDPDDAWEHGRRGRHEAADADGDDMTALQS
FVLVATCVFLFSFFV
NT seq
948 nt
NT seq
+upstream
nt +downstream
nt
tccgtgatccgtcccaccgccgtgtcgacgacgacgcccgcgcagtacggcggcgcgcgg
caccgggcgtgccgcatgtactggtgctaccagtgcggccgcgcgctccgcatcatctcc
tacccggccaccgacgtcttctgcccgcgctgcttcggctgcttcctccacgagatcgac
ccgccgccgcgccccgcgctcccgccaccgcacttcctcccgcacccgttccacccgcag
aaccagtacgacggccacccgcgccgcttggtaatatacggtggggggccgaccaccgca
cccgcgccggcgcgggctcctgcaccggtgccgcctcgtcgacgcatcccctccccgccg
ccgccgccgatggcgcggcggccgtccacgcccccggccatcgacccgggggactacttc
acggggcgcaaccttaacggcctcatcgaggagctcacccagaacgaccggccggggctg
gcgccggcgccgtcctcggccatcgactcgctcccaacggtgcggatttccggtgcccac
ctctcggacggatcgcagtgccccgtgtgcaaggaggacttcgagctcggggaggccgcg
ggccagctgccgtgcaagcacgtgtaccactccgactgcatcgttccgtggctccgcctc
cacaactcctgcccggtctgccggtaccagctgcccggcgccgcgtccaacggcagcagc
cacgccgcacctcgcggcagcggcaggaacagggagcgggagagagagcccccgacgacg
acccggtgggggtcgttctcgcgcgggctggacgaccccgacgacgcgtgggagcacggg
cggcgcgggaggcatgaggcggccgacgccgacggtgatgacatgacggcactccagtct
tttgttcttgtggcaacctgtgttttcctcttctcgttcttcgtctga
DBGET
integrated database retrieval system
