Phragmites australis (common reed): 133920166
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Entry
133920166 CDS
T10575
Name
(RefSeq) eukaryotic initiation factor 4A-III homolog A
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
paua Phragmites australis (common reed)
Pathway
paua03013
Nucleocytoplasmic transport
paua03015
mRNA surveillance pathway
paua03040
Spliceosome
Brite
Enzymes [BR:
paua01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
133920166
Messenger RNA biogenesis [BR:
paua03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
133920166
mRNA cycle factors
Stress granule specific factors
133920166
Spliceosome [BR:
paua03041
]
Complex C
Other components
EJC/TREX
133920166
Ribosome biogenesis [BR:
paua03009
]
Eukaryotic type
90S particles
Helicases
133920166
Translation factors [BR:
paua03012
]
Eukaryotic type
Initiation factors
eIF-4
133920166
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
133920166
NCBI-ProteinID:
XP_062220845
LinkDB
All DBs
Position
5:complement(46955332..46958701)
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AA seq
409 aa
AA seq
DB search
MAAAAATTSRRGPGGGRNMDDENLTFETSPGVEVVSSFDQMGIKDDLLRGIYGYGFEKPS
AIQQRAVLPIINGRDVIAQAQSGTGKTSMISLSVCQIIDTAVREVQALILSPTRELASQT
ERVMLSIGDFLNIQVHSCIGGKSIGEDIRRLENGVHVVSGTPGRVCDMIKRRTLRTRAIK
LLILDEADEMLSRGFKDQIYDVYRYLPPELQVVLISATLPHEILEMTNKFMTEPVRILVK
RDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTERMRSNNF
TVSAMHGDMPQQERDAIMGEFRSGGTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYI
HRIGRSGRFGRKGVAINFVRKDDIRILRDIEQYYSTQIDEMPMNVADLI
NT seq
1230 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggcggcggccaccacgtccaggcgcggccccggcggcggccgcaacatggac
gacgagaatctcaccttcgagacctccccgggggtcgaggtcgtcagcagcttcgaccag
atggggataaaggacgatcttctccgcggcatctacggatacggcttcgagaagccctcc
gccatccagcagcgcgccgtgctccccatcatcaatggacgcgacgtcatcgcccaggcc
cagtccggcaccggaaagacctccatgatctccctctccgtctgccagatcatcgacacc
gcagtccgcgaggtgcaggcattgattctgtcacctactagagagcttgcttcacaaacg
gagagagtaatgctgtctattggtgacttcctcaatatacaagtgcattcctgcattggt
ggcaaaagtatcggtgaggatatcaggaggcttgagaacggagtgcatgttgtgtcagga
actccaggcagagtctgtgatatgatcaagagacggaccctgcgcacaagagccatcaag
ctcctaattctggatgaagctgatgaaatgttgagcagaggctttaaggaccagatttat
gatgtctacagatatctccccccggaacttcaggttgttttgatttctgctacccttcct
catgagatcctggagatgactaacaagttcatgactgagccagttcggatccttgtgaag
cgtgatgaattgaccctggagggcatcaaacaattctttgttgctgttgagaaagaggaa
tggaagtttgatacgctctgtgatctttacgatacattgaccatcactcaggctgtcatt
ttctgcaatactaagagaaaggtggattggcttactgaaagaatgcgcagcaataacttc
acagtatcagctatgcatggtgacatgcctcaacaggaaagggatgccattatgggtgag
ttcaggtctggtggaactcgtgtgctaatcactacagatgtgtgggctcgaggactggat
gttcagcaggtttctcttgttattaattatgatctcccaaataatcgtgaactttacatc
catcgcattggtcgctccggtcgttttgggcgcaagggtgtggcgatcaattttgtgcgg
aaagatgatatccgtatactgagggacatagagcagtactacagtacgcagattgatgaa
atgccaatgaatgttgctgatcttatttga
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