Phragmites australis (common reed): 133920166
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Entry
133920166 CDS
T10575
Name
(RefSeq) eukaryotic initiation factor 4A-III homolog A
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
paua Phragmites australis (common reed)
Pathway
paua03013
Nucleocytoplasmic transport
paua03015
mRNA surveillance pathway
paua03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133920166
09122 Translation
03013 Nucleocytoplasmic transport
133920166
03015 mRNA surveillance pathway
133920166
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paua03019
]
133920166
03041 Spliceosome [BR:
paua03041
]
133920166
03009 Ribosome biogenesis [BR:
paua03009
]
133920166
03012 Translation factors [BR:
paua03012
]
133920166
Enzymes [BR:
paua01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
133920166
Messenger RNA biogenesis [BR:
paua03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
133920166
mRNA cycle factors
Stress granule specific factors
133920166
Spliceosome [BR:
paua03041
]
Complex C
Other components
EJC/TREX
133920166
Ribosome biogenesis [BR:
paua03009
]
Eukaryotic type
90S particles
Helicases
133920166
Translation factors [BR:
paua03012
]
Eukaryotic type
Initiation factors
eIF-4
133920166
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
AAA_22
AAA
Cas3-like_C_2
Helicase_RecD
Motif
Other DBs
NCBI-GeneID:
133920166
NCBI-ProteinID:
XP_062220845
LinkDB
All DBs
Position
5:complement(46955332..46958701)
Genome browser
AA seq
409 aa
AA seq
DB search
MAAAAATTSRRGPGGGRNMDDENLTFETSPGVEVVSSFDQMGIKDDLLRGIYGYGFEKPS
AIQQRAVLPIINGRDVIAQAQSGTGKTSMISLSVCQIIDTAVREVQALILSPTRELASQT
ERVMLSIGDFLNIQVHSCIGGKSIGEDIRRLENGVHVVSGTPGRVCDMIKRRTLRTRAIK
LLILDEADEMLSRGFKDQIYDVYRYLPPELQVVLISATLPHEILEMTNKFMTEPVRILVK
RDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTERMRSNNF
TVSAMHGDMPQQERDAIMGEFRSGGTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYI
HRIGRSGRFGRKGVAINFVRKDDIRILRDIEQYYSTQIDEMPMNVADLI
NT seq
1230 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggcggcggccaccacgtccaggcgcggccccggcggcggccgcaacatggac
gacgagaatctcaccttcgagacctccccgggggtcgaggtcgtcagcagcttcgaccag
atggggataaaggacgatcttctccgcggcatctacggatacggcttcgagaagccctcc
gccatccagcagcgcgccgtgctccccatcatcaatggacgcgacgtcatcgcccaggcc
cagtccggcaccggaaagacctccatgatctccctctccgtctgccagatcatcgacacc
gcagtccgcgaggtgcaggcattgattctgtcacctactagagagcttgcttcacaaacg
gagagagtaatgctgtctattggtgacttcctcaatatacaagtgcattcctgcattggt
ggcaaaagtatcggtgaggatatcaggaggcttgagaacggagtgcatgttgtgtcagga
actccaggcagagtctgtgatatgatcaagagacggaccctgcgcacaagagccatcaag
ctcctaattctggatgaagctgatgaaatgttgagcagaggctttaaggaccagatttat
gatgtctacagatatctccccccggaacttcaggttgttttgatttctgctacccttcct
catgagatcctggagatgactaacaagttcatgactgagccagttcggatccttgtgaag
cgtgatgaattgaccctggagggcatcaaacaattctttgttgctgttgagaaagaggaa
tggaagtttgatacgctctgtgatctttacgatacattgaccatcactcaggctgtcatt
ttctgcaatactaagagaaaggtggattggcttactgaaagaatgcgcagcaataacttc
acagtatcagctatgcatggtgacatgcctcaacaggaaagggatgccattatgggtgag
ttcaggtctggtggaactcgtgtgctaatcactacagatgtgtgggctcgaggactggat
gttcagcaggtttctcttgttattaattatgatctcccaaataatcgtgaactttacatc
catcgcattggtcgctccggtcgttttgggcgcaagggtgtggcgatcaattttgtgcgg
aaagatgatatccgtatactgagggacatagagcagtactacagtacgcagattgatgaa
atgccaatgaatgttgctgatcttatttga
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