Phragmites australis (common reed): 133920609
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Entry
133920609 CDS
T10575
Name
(RefSeq) transcription factor SPEECHLESS-like
KO
K20558
transcription factor SPEECHLESS
Organism
paua Phragmites australis (common reed)
Pathway
paua04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
133920609
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
paua03000
]
133920609
Transcription factors [BR:
paua03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
HLH domain only
133920609
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Motif
Pfam:
HLH
bHLH-TF_ACT-like_plant
Nro1
Motif
Other DBs
NCBI-GeneID:
133920609
NCBI-ProteinID:
XP_062221197
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Position
6:36038981..36044670
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AA seq
375 aa
AA seq
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MPRPSMGDGVCGLLVDDHCQLRHVSEAEDLFSILETWEECVNGAGGASPAVAPAFSQSCT
GGAVAGAVSARPKGNSRRRSGDEEKCYGGGAPVQKKQKGSALAQDAVADEGAAKMSHITV
ERNRRKQMNEHLAVLRSLMPCFYVKRGDQASIIGGVVNYIKELQQVLRSLETQKHRKAYA
EQVLSPRPTASPRPLPLSPRPFIKSTPPLSPRVQLPISPRTPTPGSPYKPCGGAGGRPLH
PAAAAAYMMSPAMTPTSSSSSNSLDQQHYSLQPYLPTLDSIVTELAARPTAAGLILPNVK
VEFAGPNLVLKTVSHRAPGQALKIIAALESLSLEILHVSLSTVDDTMLHSFTIKIGIDCE
LSAEELVQEIQQTFL
NT seq
1128 nt
NT seq
+upstream
nt +downstream
nt
atgccgcggccatcaatgggggacggagtgtgcgggctcttggtcgacgaccactgccag
ctccgccacgtgtcggaagccgaggacctgttcagcatcctcgagacgtgggaagagtgc
gtgaacggcgccggcggtgcttccccggctgtggcgccagcgtttagccagagctgcacc
ggtggtgctgtggctggcgcagtgagcgctagaccgaaggggaacagccggcggcgctcg
ggcgacgaagagaaatgctacggcggtggcgctccggtgcagaagaagcagaagggctcg
gcgctggcacaggatgcggtcgcagacgagggggcggcgaagatgtcgcacatcacggtg
gagcgcaaccggaggaagcagatgaacgagcacctcgccgtgctgcgctcgctcatgccc
tgcttctatgtcaagaggggagaccaagcgtccataataggaggtgtggtgaactacatc
aaggagctgcagcaggtgcttcgttcgctggagacccagaagcaccgcaaggcgtacgcc
gagcaggttctcagcccgcggccgacggcaagcccgcgcccactgcctctcagcccgcgg
ccgttcatcaagtcgacgccgccgctcagcccccgggttcagttgccgataagcccccgg
acgccaaccccgggcagcccgtacaagccctgcggcggggccggcggcaggcccctgcac
ccggccgccgccgcggcctacatgatgtcaccagccatgacgccgacgtcgtcgtcctcg
tccaactctctcgatcagcagcactactcgctgcagccgtacctgcccacgctagacagc
atcgtgaccgagctcgccgccaggcccacggcggccgggctcatcctccccaacgtaaag
gtggagtttgccggaccgaacctggttctgaagacggtgtcgcaccgcgcgccggggcag
gcgctcaagatcatcgccgcgctcgagagtctctcgctcgagatcctccacgtcagcctc
agcaccgtcgacgataccatgttgcactccttcaccatcaagattgggatcgattgcgag
ctcagcgcggaggagctcgtgcaggaaatccagcaaacgttcttgtaa
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