Phragmites australis (common reed): 133920842
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Entry
133920842 CDS
T10575
Name
(RefSeq) eukaryotic initiation factor 4A-III homolog B
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
paua Phragmites australis (common reed)
Pathway
paua03013
Nucleocytoplasmic transport
paua03015
mRNA surveillance pathway
paua03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133920842
09122 Translation
03013 Nucleocytoplasmic transport
133920842
03015 mRNA surveillance pathway
133920842
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paua03019
]
133920842
03041 Spliceosome [BR:
paua03041
]
133920842
03009 Ribosome biogenesis [BR:
paua03009
]
133920842
03012 Translation factors [BR:
paua03012
]
133920842
Enzymes [BR:
paua01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
133920842
Messenger RNA biogenesis [BR:
paua03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
133920842
mRNA cycle factors
Stress granule specific factors
133920842
Spliceosome [BR:
paua03041
]
Complex C
Other components
EJC/TREX
133920842
Ribosome biogenesis [BR:
paua03009
]
Eukaryotic type
90S particles
Helicases
133920842
Translation factors [BR:
paua03012
]
Eukaryotic type
Initiation factors
eIF-4
133920842
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Cas3-like_C_2
AAA_22
AAA_30
AAA
Utp25_C
Motif
Other DBs
NCBI-GeneID:
133920842
NCBI-ProteinID:
XP_062221397
LinkDB
All DBs
Position
6:234329..237606
Genome browser
AA seq
410 aa
AA seq
DB search
MAAAGAATTSRRGPGGGRNLDDENLTFETSPGVEVVSSFDQMGIKDDLLRGIYGYGFEKP
SAIQQRAVLPIINGRDVIAQAQSGTGKTSMISLTVCQTVDTAVREVQALILSPTRELASQ
TERVMLAIGDYLNIQVHACIGGKSIGEDIRRLENGVHVVSGTPGRVCDMIKRRTLRTRAI
KLLVLDEADEMLSRGFKDQIYDIYRYLPPELQVVLISATLPHEILEMTNKFMTEPVRILV
KRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTERMRSNN
FTVSAMHGDMPQQERDAIMNEFRSGATRVLITTDVWARGLDVQQVSLVINYDLPNNRELY
IHRIGRSGRFGRKGVAINFVRKDDIRILRDIEQYYSTQIDEMPMNVADLI
NT seq
1233 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggcgggtgcggccaccacctccaggcgcggccccggcggaggccgcaacctg
gacgacgagaacctcaccttcgagacctccccgggggtcgaggtcgtcagcagcttcgac
cagatgggcatcaaggacgatctcctccgaggcatctacggctacggcttcgagaaaccc
tccgccatccagcagcgcgccgtcctccccatcatcaatggacgcgacgtcattgcacag
gcgcagtccggcaccggcaagacctccatgatctccctcaccgtctgccagaccgtcgac
accgctgtccgcgaggttcaggcattgatactgtcacccaccagagaacttgcttcacaa
acagagagagttatgctggctattggtgactacctcaatattcaagtgcatgcttgtatt
ggtggcaaaagtatcggtgaagatatcaggaggctcgagaacggagtgcatgttgtgtca
ggaactcctggcagagtctgtgatatgatcaagagaaggaccctccgaaccagagccatc
aagctccttgttctggacgaagctgatgagatgttgagcagaggctttaaggatcagatt
tatgatatctacagatatctccccccggaactccaggttgttttgatctctgcgaccctg
ccccatgagatcctggagatgactaacaagttcatgaccgagccagttaggatccttgtg
aagcgtgatgaattgaccctggagggcatcaaacaattctttgttgctgttgagaaagag
gaatggaagtttgatacgctgtgtgatctttatgatacactaaccatcacccaagctgtc
attttctgcaatactaagagaaaggtggattggcttactgaaagaatgcgcagcaataac
ttcacagtatcagctatgcatggtgacatgcctcaacaggaaagggatgccattatgaat
gagttcaggtctggtgcaactcgtgtgctaatcacaacagatgtgtgggctcgaggcttg
gatgttcagcaggtttctcttgtcataaattatgatctcccaaataatcgtgaactttac
atccatcgcattggtcgctctggtcgttttggtcgcaagggtgtggcgatcaattttgtg
cgcaaggacgacatccgtatactgagagacatagagcagtactacagtacgcaaattgat
gaaatgccgatgaatgttgctgatcttatttga
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