Phragmites australis (common reed): 133920847
Help
Entry
133920847 CDS
T10575
Name
(RefSeq) uncharacterized protein LOC133920847
KO
K19022
AP-5 complex subunit beta-1
Organism
paua Phragmites australis (common reed)
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
paua03400
]
133920847
DNA repair and recombination proteins [BR:
paua03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AP-5 complex
133920847
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AP5B1_middle
AP5B1_C
Motif
Other DBs
NCBI-GeneID:
133920847
NCBI-ProteinID:
XP_062221402
LinkDB
All DBs
Position
6:complement(291516..295184)
Genome browser
AA seq
1098 aa
AA seq
DB search
MDRQPPPALSPQEWEQLLDDFSSSIPSRRDRWVHLPLLDLAVSSLPRRDLPSHLKPLLLS
LIDDHLLPPSPHSLPLLLASLLSFPADHPLRDHLLLTVVSAFASALSTPVSKDVEAPPLA
GLVDALLASVNRPNHAPDRAARALACDALRALDTALPGLLADALGHLYALASAERSPAAQ
SYLLLLASAARHAVHLGRLASSVSILAVSGPPTPFAVPAHLLSPPAAASAVQAAPSEVNV
RDVRKVLALLMDRPQVLTPAAAMEMTAILAEVAAAVLEWAPAIAAHIKVQFGGMVHSSDP
MLLHSLLTLFIQFPDAFGVEDERTMARRLALAAREAHRPLTARLLALHWLLGFGRFRDLV
PGLARWFYPAVFDPLALKAKKLDCLSYVAAGVAGEKVAGDRASEQATGLVDDGLVCVSAF
RWLPVWSTETGVAFRALHRNLVCAAPHSTDGTCCSGAGELLNSTIFHHLQVMLVDMASEH
RGLVPVIADFINRLLACNSHRWAGEQLLRTLDERLLPRLEPGYQLASYYPLFEKIAQNET
VPQLHLIDLLTKQMVSLTKKHGPDTELKSWSQGSKVVSICRVMLKHHYSSHVFLPLSHLL
VLTIESFPDLEVRDHARICLRVLSCVPGGKLRHLIGVGEQPSGVTPSHPGSLFDVPSPRP
AQDPKSMPDLASYIHLERVVPLLVKQSWALTLPNFSIHSRASGHILSIQDVSSAPPEQEK
SAGPTIERIGYTQEALRVMDSKGAETLQILRRYFACVPDYLHSSGLKIRIQCTFRFDSEP
FNHAWLSESPVSGSDGADELPALYAVTITFSSSAQFGKIPPCNVPFIQGEPPGSGLDIVP
LDTQHREESSYCASVVIELEPREPSPGLIDVSIAANTDNCQVLTGFLQPITVGIEDMFLK
ASVPPDTPNEGVANYNQDLFHALWEACNSSSNTGRETFPLSGGKGSAAINGTRSVKLMEV
TPKVLIGAIERYLAPFVVSVAGDSLVTILKGNGVIKNIVWDESFSDASVGADALVPYSPD
NNLQLQLIDDDGIGVGAERYGHQSKRDMGLVRVMIFLPPRYHLLFLMEIGCASTLVRIRT
DHWPCLAYVDEYLEALIC
NT seq
3297 nt
NT seq
+upstream
nt +downstream
nt
atggaccggcagcccccacccgccctgtcgccgcaggagtgggagcagctcctcgacgac
ttctcctcctccatcccatcccgccgcgaccgatgggtccacctgccgctcctggacctg
gccgtctcctcgctgccccgccgcgacctcccctcccacctgaagcccctcctcctgtcc
ctcatcgacgaccacctcctcccgccctccccgcacagcctccccctcctcctcgcctcc
ctcctctcctttcccgccgaccacccgctccgcgaccacctcctcctcaccgtcgtctcc
gccttcgcctccgccctctccacgcccgtctccaaggacgtcgaggctccgcccctcgcg
ggactcgtcgacgcgctgctcgcctccgtaaaccgccccaatcacgcgcccgaccgcgcc
gcgcgcgccctcgcctgcgacgccctgcgcgcgctcgacaccgcgctcccgggcctcctc
gccgacgccctcggccatctctacgcgctcgcctcagcggagcgctccccagccgcccag
tcatacctcctactgctcgcctccgccgcgcgccacgcagtccacctcgggaggctggcc
tccagcgtctccatcctcgcggtgtccggcccccccaccccgttcgccgtgcctgcccac
ctcctctcacctcccgccgctgcctctgccgtccaggcggcgccctcggaggtgaacgtg
agggacgtaaggaaggtgctcgctctgctcatggacaggccgcaggtgctgacgcccgca
gcggccatggagatgaccgccatccttgccgaggttgcggcggctgtgctcgagtgggca
ccagcgattgcagcgcacatcaaggtgcagtttggcggcatggtgcattcctccgacccc
atgctgctgcactcactgctcacgctgttcatccagttcccggatgcgtttggggttgag
gatgagcgcacaatggcacgccgcctagctttggctgctcgtgaggcccaccgcccgctc
acagcacgattgctggcgttgcattggctgctcgggtttggcaggttcagagatctggtg
cctggactcgcccgatggttttaccctgccgtatttgacccccttgctctcaaggccaag
aagctcgattgtctatcttatgttgctgctggagttgctggggaaaaggttgcaggagac
agagctagtgagcaagcaactggtctcgttgatgatggcttggtctgtgtctcggccttc
aggtggcttccggtatggagtaccgaaacaggtgtggcattccgagcactgcaccggaac
ttggtctgtgctgctcctcacagcaccgacggcacgtgctgctccggggctggtgagctc
ctgaattctactatcttccaccatttacaggttatgttggtcgatatggcatcagagcat
cgaggattagtccctgtgattgccgatttcatcaaccggcttctagcatgcaactcacat
cgttgggcgggggagcagttgctccgtacacttgacgagcgcctgcttccaaggcttgag
ccaggctaccagctcgcgtcatactaccctctttttgagaagattgcacagaatgagacg
gtgccgcagctccacctaatagatttgctcaccaagcagatggtttctctaaccaagaag
catggcccagacacagaactgaagtcttggtctcagggcagcaaggttgtgagcatttgt
cgtgtcatgctgaagcatcattacagctctcatgtcttccttcccctttcgcaccttctt
gtgctcaccatcgagtccttccctgatctggaggtccgggaccatgcaaggatttgcttg
cgggtgttgtcttgtgttcctggggggaaactgaggcatctcatcggagttggagagcaa
ccttcaggtgtcacaccttctcatccgggttccttgttcgatgtcccatcaccgcgccct
gctcaagatcctaagagcatgcctgatctagcgtcttacattcatctagaaagggttgtg
ccgttactcgtgaagcagtcatgggccctcacattgcctaatttcagcatccatagcaga
gcatctggtcacattttaagtatacaggatgtgagctctgctcccccggagcaagaaaag
tcggcaggacctacaatcgagagaatcggatacacacaagaagcgctacgcgtgatggat
tctaaaggtgccgaaacattgcaaattctcaggaggtacttcgcgtgcgttcctgactac
ctgcactcatctggtctcaaaatcagaatacagtgcacatttagatttgattcagagccg
tttaaccatgcttggttatcagaatcaccagtttcaggttctgatggggctgatgagttg
cctgctctttatgcagtgacaattactttttcatcaagcgcacagttcggaaaaattccc
ccatgcaatgtacctttcattcaaggggaacctccaggttctggtttggacattgtcccc
ttagatactcagcaccgggaagaatcaagttactgtgcttcagtagtgatagaattggaa
cctcgagaaccatcacctggtcttattgatgtctcaattgcagcaaatacagataactgt
caagtcttaactgggttccttcaacccattacagttgggattgaggacatgtttctgaag
gccagtgtgccgcctgatactccaaatgagggtgtggctaattacaaccaggatctgttt
catgctttatgggaggcctgcaacagttcttctaacacaggtcgagagacgttccctttg
agtggggggaaaggatcagctgcaattaatggaactcggtctgttaaactcatggaggta
actccaaaggttttgattggagctattgaaagatacctggctccctttgttgtcagtgtt
gctggagattcacttgtaaccattctgaaaggaaatggagtcattaagaacattgtgtgg
gacgaaagtttctcagatgcttctgtcggtgctgatgccttggttccatactcaccggac
aacaatctccagcttcagctcatagatgacgacggaattggggttggtgcagagaggtac
ggccatcaaagcaagagggatatgggactcgttcgtgtcatgatattcttaccacctagg
tatcaccttctcttcctgatggaaataggctgtgcctccacattggtcaggataaggacc
gatcattggccgtgccttgcatatgtggacgaatacttggaagcattgatttgttag
DBGET
integrated database retrieval system
