Phragmites australis (common reed): 133921069
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Entry
133921069 CDS
T10575
Name
(RefSeq) probable NOT transcription complex subunit VIP2 isoform X1
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
paua Phragmites australis (common reed)
Pathway
paua03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133921069
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paua03019
]
133921069
Messenger RNA biogenesis [BR:
paua03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
133921069
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
133921069
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
133921069
NCBI-ProteinID:
XP_062221772
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All DBs
Position
6:2702919..2712172
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AA seq
621 aa
AA seq
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MSGLLNSNLNSSASNLPDSTGRPFTSSFSGQSGSIPGFRHSGLHNMHGNFNLPNMPGSLA
QRNAAMSGLPSSGVQQPGGSISGRFTSNNLPVAMSQIPHAHSGVSARGMNVGAGPAFSSS
MNIGGTIQGLSSNLGTGGSRNSVPGMSVSPGLGNLGPRITSSVGNIVGGSNIGRNISSGG
LSVPSIASRMNLSGNAGSGSLNVQGSNRMINGLLQQASPQLLNMLGSSYPTSGGSLSQNQ
IQAGNNNSLSSMGMLHDASDTGPFDINDFPQLTGRPSSAGGPQGQYGSLRKQGVGVNTIV
QQSQEFSIQNEDFPALPGFKGNSSDYAVELHHKEQLHENVPVMQAQQYPMARSVGFNLGS
SYHPNRQQHQQGANSVQNAGPQNIGLRPLSQTSSLGAYDQLLQQYQQPQAQNPFRLQQMP
SAAHSYRDLSLKSTQGMPTTPDPYGLLGLLGVIRMNDAELASLALGIDLTTLGLNLNSPD
NLYKTFGSPWSNEPAKGDSDFHIPACYYFAEPPPLLQPLLFQKLQTLTLFYIFYSMPKDE
TQLCSANELYNRGWFYHRELRLWFTRIPNVEPLVKAPLYERGSYGCFDPNSWETVRKDNF
VLHYELIEKKPTLPSAAQNVR
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggcttgcttaattcaaaccttaacagttctgcatcaaatcttccagactcaaca
ggaagaccatttacatcatccttttcgggtcaatccggatcaattccaggtttccgtcat
tctggtttgcacaacatgcatggaaattttaaccttccaaatatgcctggatcacttgca
caaaggaatgccgcaatgagtggccttccatcctctggggttcagcaacctggagggagc
atttctgggagattcacttcaaacaaccttccggttgccatgtctcagattcctcatgca
cattcaggtgtcagtgctagagggatgaatgttggtgcaggtccagcatttagtagcagc
atgaatattggtggtaccattcaaggattatcctcgaacttgggcaccggtggtagtcgc
aattctgttcctgggatgtcagtatctccaggtttaggaaatttgggtccacggatcaca
agttctgtaggaaatattgtaggtggaagtaatattggaagaaatataagctctggtgga
ttgtctgtgccaagtattgcatcacggatgaatctgagtggcaacgctgggagtggtagt
ctaaatgtgcaaggatccaacaggatgataaatggcctcctccagcaagcatctcctcag
ttgttaaatatgcttggaagttcatatccaacatctggaggttcattatctcagaaccaa
atacaagcaggaaataataattctctaagttctatggggatgctgcatgatgccagtgac
actggtccatttgacataaatgattttccccaattgactggtcgacctagttctgctggt
ggtccacaaggacaatatgggtcactacgcaagcagggagttggtgttaataccatcgtt
caacagagccaggaattcagcattcaaaatgaagacttcccggctttgcctggattcaaa
ggtaactcttcagattatgctgtggagttgcatcataaggagcaacttcatgagaatgta
cctgtaatgcaagcacaacaatatcctatggcacggtcagttggttttaatttgggaagt
agctaccatccaaatcgccagcaacaccagcaaggagctaattcagtccagaatgccgga
ccccaaaatattggactaagaccactaagtcaaacttctagtttgggagcatatgatcaa
cttctgcagcaatatcagcagccacaggctcaaaatcctttcaggttgcagcagatgcct
tcagctgcacattcatatcgggatctaagtctaaaatctactcaggggatgccaacaacg
cctgatccatatggcttgttaggattgctgggagttataaggatgaacgacgctgaatta
gcatctcttgctttaggaatagatttaacgacattggggttaaatttgaattcaccagac
aatctatacaagacgtttggctcaccatggtcaaatgagccagcaaaaggggattctgat
tttcatattccagcttgttattactttgctgagccacctccgctgctacagcccttactt
tttcagaagcttcagacattaacactgttttacatcttctatagtatgccgaaagatgaa
actcagctatgttctgctaacgaactatataatcgaggatggttttaccacagagaatta
cggttatggttcacaagaattccgaatgtagaacctctagtcaaagctcctctctatgag
cgtgggtcttatggttgctttgacccaaatagctgggagacagtccgtaaggacaacttt
gttctccattacgagctgatagagaaaaagccaaccctgccctctgcagctcaaaatgtt
aggtga
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