Phragmites australis (common reed): 133921072
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Entry
133921072 CDS
T10575
Name
(RefSeq) uncharacterized protein LOC133921072
KO
K14794
ribosomal RNA-processing protein 12
Organism
paua Phragmites australis (common reed)
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
paua03009
]
133921072
Ribosome biogenesis [BR:
paua03009
]
Eukaryotic type
90S particles
Other 90S particles
133921072
Pre-60S particles
Other pre-60S particles
133921072
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HEAT_RRP12_N
RRP12_HEAT
INTS1_R4
TPR_20
Invas_SpaK
DUF7673
Motif
Other DBs
NCBI-GeneID:
133921072
NCBI-ProteinID:
XP_062221780
LinkDB
All DBs
Position
6:complement(2722087..2729918)
Genome browser
AA seq
1269 aa
AA seq
DB search
MADVDMGELPQTPRSTAGDDDLSLPEGEADLAAAILARLGSSPREDDQHLCATAAAMAQA
VRDRGVAATPVAYFAAAAAALAPLARAGAVGADRHVAGALLAFLSAAVPGLPAAVVRARG
REVAEDVVRVLEFPSMPDSGVRAGIRCLAHLISAGERASWEAVEPLFAVILWFSTDHRPK
VRKQSHSCLRDVVLSFQRQAFLVPASEGITRCFERFLLLAGGSSAVNTGVAEEGPKGAKE
VLYILNALKCCLPLMASKPSNTILKYFKALLDLNQPILTRSILEILHAVGDSPTLHVKSD
VLLDLLCLLGLSVSSERKSGDEMASIARLLHVGTKKVYNQNKNICVAKLPLVFTSLGDIL
SSEFEEARFSAVEAFKGLIDNCVNETLVSQGIAQIKARHQGLTSDPTIIEKICAILEGLL
NVRYSDVWDKSFHIISVAFDKLGEFSCDLLPEALKNLADMQNLSDDDFSFRKQLNACLGS
AVAAMGPKNVLEILQIQSICDENEWILPILEKHIVGASLQFFLRDILDIVRAVEKSIPKL
LKGDKLFSAKRAEGYVYSLWSLLPSCCNYPRDTSSNFRVLQNVLCDTLQNQPDLRGIVCS
SIQVLIKQNKEALSVEDILAEDEISKSERRAKECYTKELAEENLKAIRAFSSQILEVLCS
IFLTSSMDAIGLLQPAISEIASISDKDVIGKFFRNSIRKLLDATKAVNSEPVDDSSMQIE
ANSNTNSTARALLLDFAASLMPGLAAKSINVLFSYVKPAIKDSDSLIQKRAYKVLSMLLK
DAEFIENNLDVLLELMILSLPCQFPSKRYRLECLYHLIVYILKDSSTVRKREIVSSFITE
ILLALKEANKKTRNRAYDLLIEIARACEDAGNDERKESLHQFFDMVAGGLIGQTPYAISA
AVTGLARLTYEFSELIGVAYKLLPQTYLLMQRNNREIVKANLGFIKALVAKSKADMLHEH
LKGVVEGLLSWQSDTKNSFKAKVKSLIEILVKKCGLDAVKAVMPEEHMKLLTNIRKINER
KMRKAKSSEDGDAVSMTSGATRQSRWNHTQMFSDFGSDDDASDGPFSTQHTVASRTGSKA
STRLSRKRQADKSLLEKFIDQSTGEPLDLLDQRTVRSALKSAAGKERATPNDDDDDELEM
DPEGRIIVREEREKRKKKPVSRDDEVDERSSFRSQSVKKRKTSSSGWAYTGHEYTSKKAG
GDLKKKDKMEPYAYWPLDRKLLNRRSERKASARKGMARVMKVTKRLEGKSASAALSAKRT
AKMKHKKNK
NT seq
3810 nt
NT seq
+upstream
nt +downstream
nt
atggccgacgtcgacatgggcgagctcccgcagaccccgcgctccaccgccggcgatgac
gacctctcattaccggagggcgaggccgacctcgccgcggccatcttagcgcggctcggc
agctcgcccagggaggacgaccagcacctctgcgccaccgccgccgccatggcgcaggcc
gtcagggaccggggcgtcgccgccacgccagtggcatacttcgccgcggcagccgcggcg
ctcgctccgctagcacgcgcgggggcggtgggcgccgaccgccacgtcgccggtgcgctc
ctcgcgttcctctccgcggcggtgcccgggctccccgcagcggtggtgcgcgcgcgtggg
cgcgaggtcgccgaggacgtggtgcgcgtgctcgaattcccgtcgatgcccgattctggt
gtgagggcggggatcaggtgcctcgcgcatttgatatccgcgggggagagggcgagctgg
gaggcagttgagcctctctttgcagtgattctatggttttccaccgatcaccggccaaag
gtgagaaagcaatctcattcatgcttgcgagatgttgtcctaagttttcaaaggcaagca
tttttggttccagcaagtgaaggaataacaagatgttttgagcggtttctgctgcttgct
ggaggatcaagtgctgtaaatacaggtgtagcagaagaagggcccaagggggctaaggag
gtcctgtatattttgaatgctctgaaatgctgccttcctcttatggcatcaaagccttcc
aataccatcttaaaatattttaaagcattgttagatctgaaccaaccgattctgacaagg
agtatattggagattctgcatgccgttggtgacagtccaactttacatgtcaaatctgat
gtgttattggatcttctgtgcttgttggggctgtcagtgtcttcagaaaggaaatcagga
gatgaaatggcttcaattgcacggcttttacatgttggtactaaaaaggtttacaatcag
aataagaacatatgcgttgcaaagcttccattggtatttacttcgcttggagatatattg
tcaagtgaatttgaagaggcgagattttcagctgtggaggcttttaaaggtttaatagat
aattgtgtcaatgaaaccttggtgtcacagggcattgcacagatcaaggctagacatcaa
gggttaacatcggatcccacaatcatagagaagatatgtgctatcctggaaggcttgcta
aatgtacgttatagtgatgtctgggacaaatcatttcatataatttcagtggcatttgac
aagttaggagaattttcatgtgacctattgcctgaagcactcaagaacttggcagacatg
caaaacttgtcagatgacgacttttctttccggaagcagctcaatgcatgtcttggttca
gcggttgctgcgatggggccaaagaatgttcttgaaattcttcagattcagtcaatatgt
gatgaaaatgaatggattcttcctattttggagaagcacattgttggtgcaagtttacaa
tttttcttaagagatattttggatattgttagagctgtagagaaaagcattcctaagctt
ttaaagggtgataagcttttctccgccaagagagctgaaggttatgtgtattctctgtgg
tctttgttaccatcttgttgcaactatccacgtgatacttcaagcaattttagagttcta
caaaatgttttatgtgacactctccaaaaccagcctgacttgcgtggcattgtctgctcc
agtattcaggttctaataaagcaaaacaaagaagctctgtcagttgaagacattcttgct
gaggatgaaataagcaaatctgaacgaagagcaaaggaatgctatactaaagaactggca
gaggaaaacttgaaagcgatacgggctttttcttcacagattttggaagttctttgttct
atattcttgacgtcttcgatggatgctattggattattacagcctgctataagtgagata
gcttccatatcagacaaagatgtcattggcaagttcttccgcaactcaataagaaagttg
ttggatgccacaaaagctgttaattcagagccagtggatgatagttctatgcaaatcgaa
gccaattccaacacaaatagcacggcgagggctctactattagactttgcagcttcatta
atgcctggtttggctgcgaagtctatcaatgtcctattcagttatgtaaaacctgcaatt
aaggacagtgactcgttgattcaaaagagagcatacaaggtcctctctatgctacttaag
gatgctgaatttattgaaaataatttggatgttctgttggaattgatgattttgtcgttg
ccatgtcaatttccctcgaaacgctacaggcttgaatgcctatatcaccttatcgtttat
attttgaaggattcatctacggttagaaagagggaaattgttagttcattcatcactgaa
atacttcttgcattaaaggaggctaacaagaaaaccagaaaccgagcttatgatttgctt
attgaaattgcccgtgcatgtgaagatgctggaaatgatgagaggaaggagagcttgcac
cagttctttgacatggttgctggtggtctgattggtcaaactccatatgcaattagtgct
gctgtaactgggttagctcggctgacttacgaattttcagaacttattggagtcgcctac
aagctcctccctcagacttatttgcttatgcagaggaacaaccgggaaatagtcaaagca
aacttaggttttatcaaagctttagtggctaaatctaaagctgacatgttgcatgagcac
ttgaagggagttgttgagggtttgttgagctggcaaagtgatacaaagaattctttcaaa
gcaaaggtcaagtcactcatagaaattcttgtgaagaaatgtggcttagatgctgtaaag
gctgtgatgcccgaagagcatatgaaattgcttaccaatattaggaagattaatgaacga
aaaatgcgtaaggcaaaatcttctgaggatggggatgccgtgtctatgacctcaggagcc
acaaggcaaagtagatggaatcacacacagatgttttcggattttggaagtgacgatgat
gcatccgatggtcccttctctacccaacatactgttgcttctcgaactggatcaaaagct
tcaacgcggttgagtcggaagcgccaagcagacaagagcttactggaaaagttcattgac
cagtcgactggtgagccactagatttacttgaccagagaacagtgcggtcggctctcaaa
tcagcagcagggaaagagagggccacacccaacgacgatgacgacgatgagttggagatg
gaccctgaaggtcgtataattgtgcgcgaagagcgagagaagcgtaaaaagaagcctgtc
tctcgtgacgacgaggttgacgaaaggagctctttcagaagccagtccgttaagaagaga
aagacgtccagctctggctgggcctacactgggcacgagtacaccagcaagaaggccggc
ggtgatctgaagaaaaaagacaagatggaaccttacgcatactggccattggatcgtaag
ctgctcaaccgcaggtcagagcgcaaggcgtctgcgcgcaagggcatggccagggtcatg
aaggtcactaagaggcttgaagggaagagtgcaagtgccgcgctttctgctaagcggacg
gcgaaaatgaagcacaaaaagaacaaatga
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