Phragmites australis (common reed): 133921144
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Entry
133921144 CDS
T10575
Name
(RefSeq) THO complex subunit 5A-like
KO
K13174
THO complex subunit 5
Organism
paua Phragmites australis (common reed)
Pathway
paua03013
Nucleocytoplasmic transport
paua03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133921144
09122 Translation
03013 Nucleocytoplasmic transport
133921144
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paua03019
]
133921144
03041 Spliceosome [BR:
paua03041
]
133921144
Messenger RNA biogenesis [BR:
paua03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
133921144
Spliceosome [BR:
paua03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
133921144
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FmiP_Thoc5
AOX
Motif
Other DBs
NCBI-GeneID:
133921144
NCBI-ProteinID:
XP_062221894
LinkDB
All DBs
Position
6:complement(3673939..3679397)
Genome browser
AA seq
798 aa
AA seq
DB search
MAALPAAKAMDVEAPARLPPTASATKSRSPHDLLAETRASIEKVAARMFAIKSDGAPKSE
LRELVTQMSLLLITLRQVNREVLMEEDRVKAETEAAKAPVDSTTLQLHNLLYEKNHYVKA
IRACLDFQTKYPGIELVPEEEFQRAAPADIRDKTLAADAAHDLMLKRLNFELVQRKELCK
LHEKLEQQRSSLLETIANKKKFLSSLPSHLKSLKKASLPVQQQLGMQHTKKLKQHHAAEL
LPTPLYVAYTQLLGQKEAFGENIEVEIMGSTKDAQTFAQQQAKKENGTLSNGDNNRLDDD
LIDDDEDVQRRRSRSKKNVVKETNNPAVAYQLHPLKIIVHVYDTEDSGIKRRKLITLRFE
YLVKLNVVCVAVEDSEGLDINILCNLFPDDTGLELPHQMAKIYAGEAPNFSDKDSRPYKW
AQHLSGIDFLPEVPPTVGDDSNRALSSANLSSGLTLYRQQNRAQTILQRIRSRKVAQMAL
MWQLDYLTKLKWPQIEHDNTPWASRSPLCSLHSWSLTGSFPEPSTHSSLMVSGAASGVDS
DIERRSVTHWEETESTREDGELPVVIPAENTPNGSPMLHSEVSPEVRSHSRGLSLISKSA
TPSKLSISHSFGRNEDDLDLLMYSDSELEDQPCTREETEKGSLTVDKSWEDYASREFTML
LSKTLKNGPKVMLEAKVNISVEYPLRPPLFRLRLLSEKSENLKWHNDLRAMEAEVNRHIL
RSVPLSREDYILTHQVMCLAMLFDMHFDEDYEKSKVTSVIDVGLCKPVSGTMLTRSVRGR
DRRQTIYWRGADCSSSYL
NT seq
2397 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgctgccggcggcgaaagcaatggacgtcgaggcaccggctagactgccgccc
accgcctcggccaccaagtcgcgctcccctcacgacctccttgcggagacccgcgcctcc
attgagaaggtagcggcccggatgttcgccatcaagagcgacggcgcgcccaagtcggag
ctccgcgagctcgtcacccagatgtcgctcctcctcatcacgctccgccaagtgaatagg
gaggtactgatggaggaagatagggtgaaggcggagacggaggccgcgaaggcgccggtg
gactccacgacgctgcagctgcacaacctgctgtatgagaagaaccactacgtgaaggcc
ataagggcgtgccttgactttcagacgaagtatccggggatagagctcgtgcccgaggag
gagttccagcgtgctgcaccggcagacatccgcgacaagaccctcgctgctgacgcggcc
catgacctcatgctcaagcgcctcaactttgagctcgtccagcggaaagagttgtgcaag
ctacacgagaagttggaacaacagaggagcagcttgctggagacaattgctaataagaaa
aagttcctttcaagccttccatcacatttgaaatcactgaagaaagcatcgttaccagtg
cagcagcagctgggcatgcagcataccaagaaactaaagcagcaccatgcagctgagttg
cttccgacccctctttatgtagcatacactcagttgttaggacagaaagaagcatttgga
gagaatattgaagtagagatcatgggaagcacaaaggatgcccaaacatttgctcaacag
caagccaagaaggaaaatgggaccttatcaaatggtgacaacaacagattggatgatgat
ttaattgatgacgacgaagatgtccagagaagaagatcaaggtccaagaagaatgtagtg
aaggaaactaataatcctgcagtggcatatcagcttcatccacttaaaattattgtccat
gtatatgatactgaagattctggaatcaaacgccgtaaactcatcaccttgaggtttgaa
tacttggtgaagttgaatgttgtctgcgttgcagttgaagattcagagggtctggacatt
aatatcttgtgcaacctatttccagatgatactggtttagagctgcctcaccagatggct
aagatttatgctggggaggctccaaacttcagtgacaaggattcacggccatacaagtgg
gcacagcatctgtctggcattgacttcttgccagaagtgcctccaactgttggggatgat
tctaacagagctttgagcagcgctaatttgtcatcggggcttactctataccgccagcag
aatcgcgcacagactattttgcagagaatccgctcccggaaagttgcacagatggctctt
atgtggcaacttgattatttgacaaagctgaagtggcctcaaatagaacatgacaataca
ccatgggcatcacggagcccattgtgtagtctgcatagttggtcattgacaggttctttt
cctgagccatcaactcattctagtttgatggtgagtggggctgcaagcggtgttgacagt
gatatagagagaagatctgtgacacactgggaagaaactgagagtaccagggaggatggg
gagcttccagtggtcattcctgctgagaacacaccaaatggttcaccaatgttgcactct
gaggtgtcacctgaggttcggagccattctagaggcttatccctgatatcaaagagcgca
acaccctctaagttaagcatctcacacagttttggtagaaacgaggatgatcttgatctc
ttgatgtatagtgacagcgagttggaggaccaaccatgcactcgtgaagaaactgaaaaa
ggtagcctaactgttgataaatcctgggaggactatgcttccagggagttcaccatgctc
ctgagtaaaactctgaagaatggtccaaaagttatgctggaagccaaggttaatataagc
gtggaatatcctcttaggcctccccttttcagattacgactgctttctgaaaagtcagaa
aatttaaaatggcacaatgaccttcgtgccatggaagctgaggtgaatcgtcacatcctt
cgaagcgtacctttgtcgcgtgaggattatatattaactcaccaagttatgtgcctggcc
atgctatttgatatgcattttgatgaggattatgagaaaagcaaagttacttcagtgatt
gatgttggcctctgcaaacctgttagtggaaccatgcttactagatcagttaggggaaga
gaccgtaggcagactatttattggagaggtgccgattgctcatccagctatttgtag
DBGET
integrated database retrieval system
