Phragmites australis (common reed): 133921161
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Entry
133921161 CDS
T10575
Name
(RefSeq) DNA repair and recombination protein RAD54
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
paua Phragmites australis (common reed)
Pathway
paua03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
133921161
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
paua03400
]
133921161
DNA repair and recombination proteins [BR:
paua03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
133921161
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GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
DEAD
HDA2-3
SLFN-g3_helicase
SWI2_SNF2
Motif
Other DBs
NCBI-GeneID:
133921161
NCBI-ProteinID:
XP_062221914
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Position
6:3812202..3824910
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AA seq
960 aa
AA seq
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MPSRRKYNRPRSDVEEEEIAAISSDPDESGLEAERGAGADDDDEEYVEESSDAGTGDGAE
EGCSSDSSEGCDGDRGGGRPLRAGRRGVTAPDKERKSQNVDALVRGNLVVRRQPLIPRIL
SVSDAAAIARKPFKPPCKNGYSENNEQLTQRLSARKRFVPWGSMQTFAVIHNLPQSPAIA
SDNSLEKEEPLPPGIESLILWQRDECDKENSNFAAIEVDHLLVRYLRPHQREGVQFMFDC
VSGSLSGDGISGCILADDMGLGKTLQSITLLYTLLCQGFDGKPMVKRAVIVTPTSLVSNW
ESEIFKWLKGKVQLLALCESTRADVLSGIESFLKPLSRLQVLIISYETFRMHSSKFERPG
SCDLLICDEAHRLKNDQTLTNKALAALPCTRRILLSGTPMQNDLEEFFSMVNFTNPGVLG
DASYFRRYYEAPIICGREPTASAEEKKLGSERSAELSAKVNQFILRRTNALLSNHLPPKI
VEVVCCKLTPLQTTLYNHFIHSKNVKRLISEEAKQSKILAYITALKKLCNHPKLIYDTVK
SNSSDGSGFDDCLRFFPQELFSGRSGSWTGGGGMWVELSGKMHVLARLLGHLRQKTDDRI
VLVSNYTQTLDLFVQLCRERRYPYVRLDGATSINKRQKLVNQFNDLSRDEFVFLLSSKAG
GCGLNLVGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVYIYRFLSTGTIEEKVFQRQM
SKEGLQKVIQQEQTDNKMQGSSLSTEDLRDLFTFHEQVRSEIHENLKCSRCNKDANSLFD
GNGFDLAATEHKASISGAQDYIDIGGFGEISGCLQKMNSSHHQIGRPSEEDLGSWGHHSG
PSTVPDVILQSSAGEEVSFVFTNQVDGKLVPIESRVQSATHQPNGTAATGEKEVGKIISP
IKPGRQSSLGKNLKMMGFSLKNSSLRFPSKSRTTTPNCLPGLKKTKRLHTASDMSDDDFV
NT seq
2883 nt
NT seq
+upstream
nt +downstream
nt
atgccctcgaggaggaagtacaaccgcccccgcagcgatgtggaggaggaggagatcgcc
gccatctcctccgatccggacgagtcggggttggaggcggagcgcggggcgggggcggac
gacgatgacgaggagtacgtggaggagagcagcgacgcgggtaccggcgacggagcggag
gaaggatgcagcagcgacagcagcgagggctgtgacggcgaccgcggcggtgggcggcca
cttcgggccgggcggcgcggcgtgacggcgcccgataaggagaggaagtcgcagaacgtg
gatgctctcgtcagggggaatctggtggtaaggaggcagccacttattccacgtattctt
tcagtttctgacgcggcagcaatagctcgaaaaccattcaagcctccgtgcaaaaatgga
tatagtgagaataatgagcagcttactcagcgcctttcagctcgtaaaagatttgtccca
tggggttcaatgcagacatttgcagttatacacaatcttccacagtcgcctgccattgct
agtgataattccttggaaaaggaggaacctcttccacctggcatagagtcattgattttg
tggcaacgtgacgaatgtgacaaggaaaatagcaattttgctgcaatcgaagttgatcac
ctgcttgtgcgttacctccggccccatcaaagggaaggagttcaatttatgtttgattgt
gtctctgggtcgttgagtggtgatggcatttctggttgcattttagctgatgatatggga
ttggggaagactttacagtcgataactttactatatacccttctttgtcaaggctttgat
ggtaagccaatggttaaaagggctgtcattgtaacccccacaagcctagtgagcaactgg
gaatcggagatatttaagtggttaaagggaaaagtgcagctgcttgccctctgtgaaagc
actcgtgctgatgttctttccggaatagaaagtttcttaaaacccttgagccgtcttcag
gtacttatcatatcttatgagaccttccgtatgcattcttcaaaatttgaaagaccgggc
agctgtgaccttctcatatgcgatgaggcccataggctgaaaaatgatcagacactgaca
aataaggccttggctgcccttccttgtacacgacgcatcctcttgtcgggtaccccaatg
cagaatgatcttgaagaattcttttcaatggtaaatttcacaaatccaggggttctaggg
gacgcttcatatttccgccgatattatgaagcacctatcatttgtggaagagagcctact
gcaagtgcagaagaaaagaagttgggatctgagagatctgctgagctcagtgcaaaagta
aatcagtttatattgagacgaacaaacgctctgttatccaatcacttgcctccaaagatt
gttgaagttgtgtgctgcaagctgactcctttgcagaccacactgtacaaccacttcata
cattccaaaaatgttaaacgcttgatatctgaagaagcaaagcaatccaaaattctggca
tatattactgctcttaagaaattatgcaaccatccaaagctgatctacgacacagtaaaa
agtaacagttcagatggctctggttttgatgattgtctacgctttttcccacaggaactg
ttttcaggaagatctggatcatggaccggtggaggaggaatgtgggtagaactatctgga
aaaatgcatgtattggcaagattactggggcacctccgtcagaaaactgatgatcgtatt
gtccttgtatcaaattacactcagacattagatctatttgtgcaattatgtcgggaaaga
agatacccatatgttaggcttgatggggcaacatccattaataaaaggcaaaagctggtg
aaccaattcaacgacctatctagagatgagtttgtctttctacttagtagcaaggcaggt
ggttgtgggcttaatttggtaggtggaaatcgtttggttctctttgaccctgattggaac
cctgccaatgataagcaggctgctgctagagtatggagagatggacaaaaaaagagagtc
tacatttataggttcttaagcacaggaactattgaggagaaggtatttcagcgtcagatg
tcaaaagaaggcctccaaaaagtcattcagcaggagcaaacagacaacaaaatgcagggg
agttctctttcaaccgaagacctgcgtgatctttttacttttcatgaacaagtcaggtct
gaaatacatgaaaatttgaagtgtagccgctgtaacaaggatgccaattcgctgtttgat
ggtaatggttttgatttagcagccactgagcataaggcttcaatatcaggagcacaagat
tatattgatataggtggatttggagagatatctggatgcttgcagaaaatgaatagttca
catcatcagataggaagaccttctgaagaagatttaggaagttgggggcatcattcgggt
ccatcaaccgtacctgatgttatactccagtcttctgctggtgaagaggtttcttttgtt
ttcaccaatcaggttgatggcaaacttgttccgattgaatctagggtgcaatcagcaacc
catcaaccaaatggaacagcggctactggagaaaaagaagtggggaaaatcatttctcct
atcaaacctgggaggcaatcctcacttggcaagaatttgaagatgatgggatttagttta
aagaattcatctttgagatttccatctaagtccagaacaacaacaccgaactgcttgcca
gggttgaagaaaactaaaaggctccatactgcttctgatatgtctgatgatgattttgtt
tga
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