Phragmites australis (common reed): 133921501
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Entry
133921501 CDS
T10575
Name
(RefSeq) protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1-like isoform X1
KO
K11661
helicase SRCAP/SWR1 [EC:5.6.2.-]
Organism
paua Phragmites australis (common reed)
Pathway
paua03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
133921501
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
paua03036
]
133921501
Chromosome and associated proteins [BR:
paua03036
]
Eukaryotic type
Chromatin remodeling factors
SRCAP complex
133921501
SWR1 complex
133921501
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
HSA
ResIII
DEAD
Myb_DNA-bind_6
DBINO
Motif
Other DBs
NCBI-GeneID:
133921501
NCBI-ProteinID:
XP_062222374
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All DBs
Position
6:8377189..8390615
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AA seq
2026 aa
AA seq
DB search
MASKGPRSKLDHETRARRQKALEAPREPRRPKVHWDHVLAEMVWLAKEFDSERKWKLSMA
KRIAQRANKSIVNQATKGERKQKEEEHRMRKVALNISKDVKKFWIKIEKLVVYKNQLELE
ERKKKALDKQLDFLLGQTERYSTMLAENLVDRPYPQKLENGTLQTNQSSHPEDVAEENIN
APTPDDLDNMEVDDDYESSLDEEPEDDERTIDEDEAQITEAERNEELAALQAEADLPLDD
ILKMYTETKVQYFSVSREGSPDSKDILSNLDSKTLIVDSSNQANGHEPAQSSSDEGNSSE
EVDDGHSYAEFVKKNHGKSNGNISAIDEQEDEDYVAADEGKDDEATLSEEEELAKKEDPD
HLEEIKLLQKESEIPLEELLARYQKDGYEDHGTTELENSPSFVKEVDTDMSVDDDSANIL
KANSDAYEAHQSMDMLETEHNVSANALESVAASEPCVQENFLEEDKVTDVKTVDGNKSDD
VIADAAAAARSAQPTGNTFLTTKVRTKFPFLLKHSLREYQHIGLDWLVAMYEKRLNGILA
DEMGLGKTIMTISLLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSA
KERKQKRQGWMKPNYFHVCITTYRLVIQDSKVFRRKKWKYLILDEAHLIKNWKSQRWQTL
LNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHVFQSHQEFKDWFCNPISGMVEGQDKVN
KEVIDRLHNVLRPFILRRLKRDVEKQLPKKHEHVIYCRLSRRQRNLYEDFIANSETQSTL
ASGNYFGMISIIMQLRKVCNHPDLFEGRPIISSFDMSGINMQLSYSVCMLLDKSPFSQVD
LSDMNFVFTQNEFSMTSWEVDKVVAAFSPSITSMGSGLEISCSNKDHQGSNLTNIFEDIQ
KALREERIKESRERAASIAWWNKVRCQKRPVYGTDMREVLTVKHPVSDVLEKRNNALCHM
DYSSSLADLVVPSVERFQKMLDIVESFTCAIPAARAPTPVCWCSKGKSPVFIEPAYRETC
MNEFSPILSPIRPAIVRRQVYFPDRRLIQFDCGKLQELAVLLRRLKSEGHRALIFTQMTK
MLDVLEEFINLYGYTYLRLDGSTPPEERQTLMQRFNTNPKFFLFILSTRSGGVGINLVGA
DTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRALDDLV
IQRGSYNTEFFKKLDPMEFFSGHTSLNVENQQKECCMASGSSNEVGLVLSNADVEAAIRQ
AEDEADYMALKKLEQEEAVDNQEFSEEVAGRLEDDEFVNEEDVKPDEHINEEHKYNSSDA
DKEKNVAFPINQLDEEKALTLAGGDEDIDMLADVKQMAAAAAAAGQASSSFENQLRPIDR
YAMRFMELWDPVINKAAVNHQVNIEEEEWELDRIEKLKEDLEAEIDEDQEPLSYESWDVD
FATTAYRQHVEALTQKQLLEEQERQAREAAKELEEKNDNISINHRKSKKNKKKTGKFKSL
KKGRLISESEVVPEETSVDTMSSDDNAPSPELLSDESPQHYSMKRKKVMSATEEENSNRS
VKKLKKAHKSNSISEALSLKHLFEGKQLKLKEELNGSDPKSAIRTKSDSRISIPCMSVKR
VIVIKPERLKKKGIWSRDCVPDSWTSEEDAVLCATVHEYGPFWELASDILHSLPGGAFYK
GRYHHPVHCCERYRELFCKHAMSATENSNSEKVPTGTGKAILRVSEDQTQMLVNVTSELP
NNELLLQKHFVAVLSSVWRSKCRRDPRHVTSTYSSALHMFSPGGFSKNWSMTNFRPSFTL
VRTALTDAQVECTQLVIPPTARNQKYCRNFLELELDFLTDQHGYEEDFPAIVNVSILELE
IPKHAVEPVEPSLLSGLSCRQAENRLRIASEACFEGEGSHWASSAFHIYDPARHKSGLKS
TGKHKAASESGRHPRSKIQKITEPHQEGPIGMNNFLRTPGQLLPNTAEFHISESLSDFGI
CDSEFTYSEDLSQETDHLEFLPYQEDPGFLHGIEELEPLSDLTDIG
NT seq
6081 nt
NT seq
+upstream
nt +downstream
nt
atggcatcaaaaggtccccggtcaaagctggatcatgagacaagagctagacgtcagaag
gctcttgaagctccaagagagcctcgaaggccaaaagttcattgggaccatgtccttgct
gagatggtttggctggcaaaggagttcgattctgagagaaaatggaagttatccatggct
aaaaggattgctcaaagagccaataagagcatagttaaccaagcaacaaagggcgagcga
aagcagaaggaggaggaacatagaatgagaaaagtagcccttaatatttctaaggacgtg
aagaagttctggatcaaaatagaaaagctggttgtctataagaatcaactagagcttgag
gaaaggaagaaaaaggctcttgataagcaacttgatttccttttaggtcagactgaaagg
tattcaacaatgttggctgaaaaccttgtggacaggccctatccccaaaaactagaaaat
ggaactttgcagacaaatcaatcatcccatccagaggatgtagcggaagagaacataaat
gcgccaactcctgatgatcttgataatatggaagtggatgatgattacgagagctccttg
gatgaagagccagaagatgatgagcgcacaattgatgaggatgaagctcagatcacagaa
gctgagcgcaatgaagaattagctgctttacaggcagaagctgacctaccactggatgat
attctcaagatgtacacagaaaccaaagttcaatatttctcagttagcagggaaggcagt
ccagacagcaaagacattttaagtaatttagattcaaagactttgattgtagattcttcg
aaccaggctaatggtcatgaacctgctcaatcttcaagtgacgaaggcaattcttctgag
gaagtggatgatggccattcttatgctgagtttgtgaagaagaatcatggaaaaagtaat
ggcaatatctctgctatcgatgagcaggaggacgaagattatgttgctgctgatgaagga
aaggatgacgaagcaactttgtctgaagaggaagaattggcaaagaaagaagaccctgat
catctggaagagattaagttactgcagaaggagagtgagatcccactagaagaacttctt
gcgaggtaccaaaaggatggctatgaagatcatgggacaactgagttggagaattcaccc
agttttgtgaaagaggtcgatactgacatgtctgtggatgatgactcagcaaatattttg
aaagcgaacagtgatgcatatgaggctcaccaatccatggacatgctggaaactgagcat
aatgtgagtgctaatgctctagaatcggtagcagcctcagagccttgtgtgcaagaaaac
tttttggaagaggataaggtcactgatgttaagacggtcgatggtaataagagtgatgat
gtaattgctgatgctgcggctgctgcaagatcagcacaaccaactggtaacaccttcttg
acaacaaaagtgcgcacaaagttcccgttccttcttaagcattctcttcgtgaataccag
catataggtttggattggttggttgctatgtatgagaagaggcttaatggaattctagca
gatgagatgggtttagggaagacaatcatgactatctccttgctggcacaccttgcatgt
gagaaggggatatggggtccacatcttatcgttgtgccgaccagtgttatgctgaattgg
gagactgaatttctcaagtggtgtcctgcttttaaaatactgacttattttggaagtgca
aaggagagaaagcagaaacgtcagggctggatgaaaccaaattacttccatgtatgcatc
acaacatacaggcttgttattcaggactctaaagtatttaggcgaaaaaaatggaagtat
cttattcttgatgaggctcacctaataaagaactggaaatcacagagatggcagactttg
cttaattttaattcaaagcgtcgcattcttttgactggaactcctttgcaaaacgacctt
atggaactttggtctctcatgcactttttgatgcctcatgtgtttcagtctcaccaagag
ttcaaagattggttctgcaacccaatttcaggaatggtggagggccaagataaagttaac
aaggaagtcatagatcgactgcacaatgtccttcgtccatttatactccgtcgattgaaa
cgggatgttgagaaacagttgccaaagaagcatgagcatgttatatactgccgactttct
agaagacaaagaaacttatatgaagattttattgctaactcagagacacaatcaacactg
gcaagtgggaattattttggcatgattagtatcattatgcaacttagaaaggtctgtaac
catccagatctttttgaaggtcgcccaataataagctcatttgacatgtcagggattaac
atgcagctcagctattctgtttgcatgctccttgataagagtccattttctcaggttgac
ttatctgatatgaattttgtgtttactcaaaatgaatttagcatgacttcctgggaagtt
gacaaggttgttgctgctttttctccaagcatcacctccatgggctctggtctggagatt
tcttgctctaataaggatcatcagggaagtaatttaacaaatatttttgaagatattcag
aaagcactacgggaggagagaataaaagaatccagagaaagggcagcttccattgcatgg
tggaataaggtacggtgtcaaaagaggcctgtctatggcacggacatgagagaggttttg
actgtaaaacatcctgtatctgatgttcttgagaagaggaacaacgcgttgtgccacatg
gattattcatcaagcctagcagatcttgttgttccatccgtggaacgctttcagaaaatg
cttgatattgttgaatcatttacatgtgcaattccagctgcacgagctcctacccctgtt
tgctggtgcagcaaagggaaatctcctgtttttattgagccagcatatcgagaaacatgc
atgaatgagttttctcccattctttctcctatacggcctgcaattgttcgccgtcaagtc
tacttccctgacaggcgtttgatccagtttgattgtgggaagttgcaggagcttgctgtt
ttgctgaggcgtttgaagtcagaagggcacagagccttgatatttactcagatgactaag
atgcttgacgtcttggaagagttcataaatttatatggatatacatatttacgtctagat
ggttctaccccaccagaagagaggcagactctaatgcagaggttcaatactaatccaaag
tttttccttttcattttgtccactcgtagcggtggtgtgggaatcaacctagtaggtgca
gacactgtcatcttctacgacagtgactggaaccctgcaatggaccaacaagcgcaagac
agatgtcacaggattggtcagactcgtgaagttcacatatatagactcattagtgaaagc
actatagaggagaatattctcaagaaagcaaatcagaaacgagctcttgatgatctagtg
atacagcgaggtagctacaatacagaattcttcaagaaacttgatcccatggaattcttt
tctgggcatacgtctcttaatgtggaaaatcaacagaaggaatgctgtatggcttctgga
tcttcaaatgaagtgggtctggtgctgtcaaatgcagatgtggaagcagctattagacaa
gcagaggatgaagctgactatatggctctcaagaagctggagcaggaagaagctgtggac
aatcaagagttcagtgaggaggttgctggaagactagaggatgatgagtttgtaaatgag
gaggatgtaaaacccgatgaacacattaatgaagaacataaatacaactcttctgatgcg
gataaggagaagaatgtcgcttttcctatcaatcaattagatgaagaaaaggctcttaca
ttggctggtggggacgaagatattgacatgcttgctgatgtgaaacagatggctgctgca
gctgctgccgcaggacaagcaagttcgtcttttgaaaatcagctccggccaatcgataga
tacgcaatgcgttttatggaactctgggatccagtaatcaacaaagctgctgtaaatcat
caggtaaatattgaagaagaagaatgggagcttgatcgtattgaaaaactcaaagaagat
ttagaagcagaaattgatgaagaccaggaaccactttcttatgagtcatgggatgttgat
tttgctaccacagcctatcgccaacatgttgaggctctaactcaaaagcagttgttggaa
gaacaagaaagacaagctcgtgaagcagcaaaagaattggaggaaaagaatgataatata
agcattaaccatagaaagtcaaaaaagaacaaaaagaagacaggcaagtttaagtccctg
aaaaaagggcgtttgatatctgagtcagaggttgtaccggaggaaacatctgtagataca
atgagcagtgatgacaatgcaccctcacctgagcttttaagtgatgaatcaccacaacat
tattctatgaagcgtaaaaaggtaatgtctgcgaccgaggaagaaaacagtaacagaagt
gtgaagaagctcaaaaaagcccacaaatcaaattctatttcggaagccttgtcacttaag
cacttgttcgagggcaagcagcttaagttgaaggaggagcttaatggttctgacccaaaa
tcagcaattagaactaagagcgatagcagaatttccatcccttgcatgtcagtaaaacgt
gtcattgtaatcaagcctgagaggctgaaaaagaagggaatatggtctcgagattgtgtt
ccagactcatggacatctgaggaagatgcggttctttgcgcaactgtacatgagtacggt
cccttttgggaactggctagtgatattcttcattccttacctggtggggcattttataag
ggtagatatcatcatcctgtacattgctgtgagagataccgagaactgttctgcaaacat
gccatgtcagcaacagaaaattcaaacagtgaaaaagttcctactgggactgggaaggct
atactgagagtatcggaggatcaaactcagatgttagtgaatgtgactagtgaacttcct
aacaatgaattacttctccagaaacactttgtggctgtactttcatctgtctggagatca
aaatgtcgacgtgatccccgccatgttactagtacttactctagtgctctccatatgttt
tctcctggtggatttagtaagaactggtccatgacaaactttagaccaagcttcactcta
gttaggacagcccttacagatgctcaggttgaatgtacacaattggtgattccaccaaca
gcgagaaatcagaaatactgtcggaactttttggaattagagttggatttcctgacagat
cagcatggttatgaggaggacttcccagctatagtgaatgtgtccatactagaactagaa
atacctaaacatgctgtggaaccagtggaaccatcattactgtctggactttcttgtagg
caagctgagaatcgactcaggatagcatcagaagcttgttttgaaggtgaaggttctcat
tgggcatcatcagctttccacatatatgatcccgcacggcacaaatctggtctgaagtcc
acaggaaagcacaaggcagcatcagaatctggaagacatcccagatccaaaatccagaag
attactgaaccacatcaggaagggccaattggaatgaataattttctccggacgcctggc
caactattgccaaatacagctgaatttcatattagcgagtccctgtctgactttggtatc
tgtgattctgaattcacctactctgaggatctctctcaggagactgaccacctcgagttc
ctcccataccaggaggaccctggtttccttcatggtattgaggagttggaacctctttca
gatttgacagacattggatga
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integrated database retrieval system
