Phragmites australis (common reed): 133921522
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Entry
133921522 CDS
T10575
Name
(RefSeq) uncharacterized protein LOC133921522
KO
K14315
nucleoporin NDC1
Organism
paua Phragmites australis (common reed)
Pathway
paua03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
paua00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
133921522
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paua03019
]
133921522
Messenger RNA biogenesis [BR:
paua03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
133921522
SSDB
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Paralog
GFIT
Motif
Pfam:
Ndc1_Nup
Motif
Other DBs
NCBI-GeneID:
133921522
NCBI-ProteinID:
XP_062222423
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Position
6:complement(8696166..8700630)
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AA seq
504 aa
AA seq
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MDRAPPHGAPRDAVGQRWLAVFALQAALSAAASALHLAASPRRRGHPLLGVPRGLLLALH
PLLSCAATGLLALALLLSASPHPRPPPLPRRALAASLFAAAGALCVGAAAPLLPEEAGWV
AVAGLGFRGAVLGAVFAAHYFGRRRWLLQFPVVQRPLFYGLKMGLLPSGKRALKVSLQAF
CLSFVLILFLPRQFRTGGSIGSQLLTQISIFMVTTGVSLCLEISHHFVQVVHTRRCSFAP
PQSTAAAETNPSEFILETLEQSDPRSLLQYLAYQDLCVVSECNLEPWRRGAFFEESGETY
KRIATACLKPVEEFTSKIAEALEDFSSDNLELMSQQSKLFSAFDDSQICTWCARTLAGLT
ARSRQEDRYGVAQLTSCNAAVMTTLLSALVAIEECLGKKTNPLPVHSLGPESIRWGNFST
GRKGRRTAIASTQRGGLHKKAYAMADVLRTSIYQIVSAFVDDLRANAKPSSLEKNWISEG
RKPIYGSHAVLVQKLTLFIEYRAV
NT seq
1515 nt
NT seq
+upstream
nt +downstream
nt
atggaccgggccccgccgcacggcgctccccgcgacgccgtcggacagcggtggcttgcc
gtcttcgccttacaggccgcgctctcggccgccgcctcggcgctccacctcgcggcctcc
ccgcgccgccgcggccaccccctcctcggggtgccccggggcctcctcctcgcgctccac
ccgctcctctcctgcgccgccacggggctcctcgcgctcgcgctcctcctctccgcgtcc
ccgcacccgcgccctcccccgctgccgcggcgcgcgctcgcggcctccctctttgccgcg
gccggcgcgctctgcgtgggcgccgccgcgccgctgctccccgaggaagccgggtgggtg
gccgtcgctggtctggggttccgcggggccgtgctaggcgccgtgttcgccgcgcactac
tttggtcgtcggaggtggttgctccagttccctgtcgtgcagcgacctctattctatgga
ttgaagatggggcttctgccatctgggaaaagggctctaaaagtgtcgctccaggccttc
tgcctttcctttgtcctgattttattccttcctcggcaattcagaactggaggctctatt
ggaagccaactactcactcagatcagcatttttatggtgaccactggtgtttccttgtgt
ttggaaataagccatcattttgtccaggttgtacatacgaggaggtgcagtttcgctcca
cctcagagcactgccgctgcagagactaacccctctgaatttatcctggaaacattggaa
caaagtgatccgcgatcattattacaatatcttgcttaccaagatttgtgtgtggtatct
gagtgtaacttggaaccttggcgtcgaggtgccttctttgaggagtctggtgaaacttat
aaaagaattgccacagcatgtctgaagccagttgaggagtttacttcaaaaattgctgaa
gcccttgaagatttttctagtgataatctggaattgatgtcacaacagtccaaactcttt
agtgcttttgatgattctcagatatgcacatggtgtgctcggacattggcgggattaact
gcgcgctcgcgccaagaggatcggtatggagttgctcaactcactagctgcaatgctgct
gtgatgactacgttactgtctgctctagtggcaattgaggaatgtctaggaaagaaaacg
aacccactacctgtgcactcactgggtccagaaagcattaggtggggtaacttttccaca
ggacgaaaaggccgtagaactgcgattgcaagcacgcaaagaggtggcttgcacaagaaa
gcttatgccatggcagatgttcttaggacctcaatttaccagatagtttcagcattcgtg
gatgacctgcgagcaaatgcaaagccatcaagtttggagaagaattggatcagtgaaggg
agaaagcctatatatggttcacatgctgtgttggttcagaaattgactttgtttattgag
taccgtgctgtctga
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